Factsheet for Bra008668.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005541.1-P
Bra006246.1-P
Bra006326.1-P
Bra008668.1-P
Bra023453.1-P
Bra023541.1-P
Bra035252.1-P
Bra038098.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15850.1	Bra038098.1-P	AT1G53090.1	16854975
AT5G15850.1	Bra038098.1-P	AT1G53090.1	18812498
AT5G15850.1	Bra005541.1-P	AT2G32950.1	18812498
AT5G15850.1	Bra035252.1-P	AT4G11110.1	16854975
AT5G15850.1	Bra006246.1-P	AT5G14250.1	18812498
AT5G15850.1	Bra006326.1-P	AT5G14250.1	18812498
AT5G15850.1	Bra023453.1-P	AT5G14250.1	18812498
AT5G15850.1	Bra008668.1-P	AT5G15850.1	18812498
AT5G15850.1	Bra023541.1-P	AT5G15850.1	18812498

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69493	Canola	nucleus	98.52	98.52
Bra023541.1-P	Field mustard	nucleus	73.29	78.41
AT5G15850.1	Thale cress	nucleus	73.59	69.86
Bra021464.1-P	Field mustard	nucleus	54.6	57.32
Bra001043.1-P	Field mustard	nucleus	33.83	50.0
Solyc02g089500.2.1	Tomato	nucleus	21.07	50.0
VIT_14s0083g00640.t01	Wine grape	nucleus	57.27	49.36
Bra008669.1-P	Field mustard	nucleus	52.23	48.09
KRH45169	Soybean	nucleus	49.26	47.7
KRH18308	Soybean	nucleus	50.74	47.37
KRG93763	Soybean	nucleus	50.74	46.72
Bra032061.1-P	Field mustard	nucleus	40.06	46.71
PGSC0003DMT400026065	Potato	nucleus	56.68	46.25
KRH01455	Soybean	nucleus	48.07	46.02
GSMUA_Achr4P18680_001	Banana	nucleus	11.57	44.32
PGSC0003DMT400026068	Potato	nucleus	52.52	43.7
Bra036528.1-P	Field mustard	nucleus	39.17	38.26
GSMUA_Achr9P22690_001	Banana	nucleus, plastid	32.64	37.8
Bra009805.1-P	Field mustard	nucleus	39.17	37.61
Bra020425.1-P	Field mustard	nucleus, plastid	37.39	36.84
GSMUA_Achr3P28130_001	Banana	nucleus	30.27	36.43
Bra002709.1-P	Field mustard	nucleus	20.18	31.19
Bra004423.1-P	Field mustard	nucleus	22.26	22.46
Bra001264.1-P	Field mustard	nucleus	23.15	22.22
Bra030070.1-P	Field mustard	nucleus	19.88	21.75
Bra020709.1-P	Field mustard	nucleus	22.55	21.65
Bra040020.1-P	Field mustard	nucleus	23.15	21.31
Bra029666.1-P	Field mustard	nucleus	23.44	20.47
Bra037499.1-P	Field mustard	nucleus	20.18	19.71
HORVU0Hr1G022380.1	Barley	cytosol	15.73	18.66
Bra023858.1-P	Field mustard	nucleus	20.77	18.13
Bra041077.1-P	Field mustard	nucleus	21.07	17.4
Bra010908.1-P	Field mustard	nucleus	20.47	16.51

Protein Annotations

MapMan:15.5.1.2	EnsemblPlantsGene:Bra008668	EnsemblPlants:Bra008668.1	EnsemblPlants:Bra008668.1-P	InterPro:CCT_domain	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402	UniProt:M4CWS1	PFAM:PF00643	PFAM:PF06203
PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31319	PANTHER:PTHR31319:SF39	SMART:SM00336	UniParc:UPI0002544C3B
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

AT5G15850 (E=7e-106) COL1, ATCOL1 | COL1 (constans-like 1); transcription factor/ zinc ion binding

Coordinates

chrA10:+:13308686..13309699

Molecular Weight (calculated)

37952.3 Da

IEP (calculated)

6.662

GRAVY (calculated)

-0.676

Length

337 amino acids

Sequence
(BLAST)

001: MLKQEGNWAQ TCDTCRSAAC TVYCRPDSAY LCTSCDAQIH EANRLASRHE RVRVCQSCER APAAFFCKAD AASLCTACDS QIHSANPLAR RHQRVPILPI
101: SGSMVTNHSS ETTEAEDIVV VGQEEEDEAE AASWLLPTSV KNCGDNNNNN NNSQDNRFSV GEEYLDLVDY SKYQQDYNVP QRRSYVADGV VPLQVEVSKS
201: LSHMHHEQHN FQFGFTNVSS EASPIHMVSL VPESTLSETT VSNPRSPKAA TEELPEAPVQ MLSPMERKAR VMRYREKKKT RKFEKTIRYA SRKEYAEKRP
301: RIKGRFAKRN EVDAEEADKA FSSMVMFDTG YGIVPSF

Best Arabidopsis Sequence Match ( AT5G15850.1 )
(BLAST)

001: MLKVESNWAQ ACDTCRSAAC TVYCRADSAY LCSSCDAQVH AANRLASRHE RVRVCQSCER APAAFFCKAD AASLCTTCDS EIHSANPLAR RHQRVPILPI
101: SEYSYSSTAT NHSCETTVTD PENRLVLGQE EEDEDEAEAA SWLLPNSGKN SGNNNGFSIG DEFLNLVDYS SSDKQFTDQS NQYQLDCNVP QRSYGEDGVV
201: PLQIEVSKGM YQEQQNFQLS INCGSWGALR SSNGSLSHMV NVSSMDLGVV PESTTSDATV SNPRSPKAVT DQPPYPPAQM LSPRDREARV LRYREKKKMR
301: KFEKTIRYAS RKAYAEKRPR IKGRFAKKKD VDEEANQAFS TMITFDTGYG IVPSF

Arabidopsis Description

COL1Zinc finger protein CONSTANS-LIKE 1 [Source:UniProtKB/Swiss-Prot;Acc:O50055]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.