Factsheet for Solyc02g089500.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g089500.2.1
Solyc02g091710.2.1
Solyc02g093920.2.1
Solyc03g111450.1.1
Solyc03g111460.1.1
Solyc03g111470.1.1
Solyc06g063280.1.1
Solyc06g072040.1.1
Solyc06g083590.2.1
Solyc06g083600.1.1
Solyc07g063120.2.1
Solyc08g081990.2.1
Solyc09g074760.1.1
Solyc12g005950.1.1
Solyc12g013840.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02380.1	Solyc06g063280.1.1	AT3G21150.1	21798944
AT5G15840.1	Solyc12g005950.1.1	AT2G32950.1	18296627
AT5G15840.1	Solyc12g005950.1.1	AT2G32950.1	18388858
AT5G15840.1	Solyc09g074760.1.1	AT2G47810.1	17138697
AT5G15840.1	Solyc06g083590.2.1	AT3G24650.1	10743655
AT5G15840.1	Solyc06g083600.1.1	AT3G24650.1	10743655
AT5G15840.1	Solyc06g072040.1.1	AT3G48590.1	17138697
AT5G15840.1	Solyc03g111450.1.1	AT5G50470.1	17138697
AT5G15840.1	Solyc03g111460.1.1	AT5G50470.1	17138697
AT5G15840.1	Solyc03g111470.1.1	AT5G50470.1	17138697
AT5G15840.1	Solyc03g111450.1.1	AT5G50480.1	17138697
AT5G15840.1	Solyc03g111460.1.1	AT5G50480.1	17138697
AT5G15840.1	Solyc03g111470.1.1	AT5G50480.1	17138697
AT5G15840.1	Solyc03g111450.1.1	AT5G50490.1	17138697
AT5G15840.1	Solyc03g111460.1.1	AT5G50490.1	17138697
AT5G15840.1	Solyc03g111470.1.1	AT5G50490.1	17138697
AT5G15840.1	Solyc02g091710.2.1	AT5G65683.1	21798944
AT5G15850.1	Solyc07g063120.2.1	AT1G53090.1	16854975
AT5G15850.1	Solyc12g013840.1.1	AT1G53090.1	16854975
AT5G15850.1	Solyc07g063120.2.1	AT1G53090.1	18812498
AT5G15850.1	Solyc12g013840.1.1	AT1G53090.1	18812498
AT5G15850.1	Solyc12g005950.1.1	AT2G32950.1	18812498
AT5G15850.1	Solyc08g081990.2.1	AT4G11110.1	16854975
AT5G15850.1	Solyc02g093920.2.1	AT5G14250.1	18812498
AT5G15850.1	Solyc02g089500.2.1	AT5G15850.1	18812498

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g089540.2.1	Tomato	nucleus	72.54	26.34
Solyc02g089520.1.1	Tomato	nucleus	73.94	25.67
KRH18308	Soybean	nucleus	59.86	23.55
CDY71884	Canola	nucleus	48.59	23.39
CDX90969	Canola	nucleus	52.82	23.36
Bra023541.1-P	Field mustard	nucleus	51.41	23.17
KRG93763	Soybean	nucleus	59.15	22.95
CDX85529	Canola	nucleus	50.7	22.71
CDY71818	Canola	nucleus	47.18	22.64
CDY26470	Canola	nucleus	51.41	21.92
AT3G02380.1	Thale cress	nucleus	53.52	21.9
CDX69493	Canola	nucleus	51.41	21.66
Bra021464.1-P	Field mustard	nucleus	48.59	21.5
Bra008668.1-P	Field mustard	nucleus	50.0	21.07
AT5G15850.1	Thale cress	nucleus	52.11	20.85
KRH45169	Soybean	nucleus	50.0	20.4
KRH01455	Soybean	nucleus	48.59	19.6
AT5G15840.1	Thale cress	nucleus	50.0	19.03
CDY26469	Canola	nucleus	47.89	18.58
Bra008669.1-P	Field mustard	nucleus	47.89	18.58
CDX69494	Canola	nucleus	47.89	18.48
Solyc08g006530.2.1	Tomato	nucleus	45.07	18.34
Solyc12g096500.1.1	Tomato	nucleus	45.77	18.16
HORVU0Hr1G022380.1	Barley	cytosol	30.28	15.14
GSMUA_Achr3P28130_001	Banana	nucleus	29.58	15.0
Solyc07g006630.2.1	Tomato	nucleus	38.03	13.99
Solyc12g006240.1.1	Tomato	nucleus	25.35	13.38
GSMUA_Achr9P22690_001	Banana	nucleus, plastid	24.65	12.03
Solyc09g074560.2.1	Tomato	nucleus	30.28	11.53
Solyc07g045180.2.1	Tomato	nucleus	28.17	9.57
Solyc05g024010.2.1	Tomato	nucleus	28.17	8.85
Solyc05g046040.1.1	Tomato	nucleus	26.06	8.83
Solyc05g020020.2.1	Tomato	nucleus	25.35	8.78
Solyc04g007470.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	26.06	7.79
GSMUA_Achr4P18680_001	Banana	nucleus	3.52	5.68

Protein Annotations

MapMan:15.5.1.2	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0008270	GO:GO:0009416
GO:GO:0009628	GO:GO:0009791	GO:GO:0009908	GO:GO:0009909	InterPro:IPR000315	UniProt:K4BCA1
PFAM:PF00643	PFscan:PS50119	PANTHER:PTHR31319	PANTHER:PTHR31319:SF39	SMART:SM00336	EnsemblPlantsGene:Solyc02g089500.2
EnsemblPlants:Solyc02g089500.2.1	UniParc:UPI0002768C4E	InterPro:Znf_B-box	:	:	:

Description

No Description!

Coordinates

chr2:-:51307887..51308594

Molecular Weight (calculated)

15178.2 Da

IEP (calculated)

8.165

GRAVY (calculated)

-0.015

Length

142 amino acids

Sequence
(BLAST)

001: MLKNENSGVF YGSRNNWSRV CDSCRSTACA VYCRADSSFL CAGCDTRMHA ANLLASRHKR VWICEACERS PAAFLCKADA ASLCTSCDAD IHSASPLACR
101: HHRVPIMTIL GSLYGPPAVE TIGSGSIMIG GPTGESRRIM GS

Best Arabidopsis Sequence Match ( AT5G15840.2 )
(BLAST)

001: MLKQESNDIG SGENNRARPC DTCRSNACTV YCHADSAYLC MSCDAQVHSA NRVASRHKRV RVCESCERAP AAFLCEADDA SLCTACDSEV HSANPLARRH
101: QRVPILPISG NSFSSMTTTH HQSEKTMTDP EKRLVVDQEE GEEGDKDAKE VASWLFPNSD KNNNNQNNGL LFSDEYLNLV DYNSSMDYKF TGEYSQHQQN
201: CSVPQTSYGG DRVVPLKLEE SRGHQCHNQQ NFQFNIKYGS SGTHYNDNGS INHNVRLLYI CYPFNLASSH NAAG

Arabidopsis Description

COZinc finger protein CONSTANS [Source:UniProtKB/Swiss-Prot;Acc:Q39057]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.