Factsheet for Solyc02g089520.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026068	Potato	nucleus	90.71	91.6
Solyc02g089540.2.1	Tomato	nucleus	82.15	85.93
Solyc02g089500.2.1	Tomato	nucleus	25.67	73.94
VIT_14s0083g00640.t01	Wine grape	nucleus	64.79	67.77
GSMUA_Achr3P28130_001	Banana	nucleus	35.21	51.43
GSMUA_Achr4P18680_001	Banana	nucleus	10.76	50.0
GSMUA_Achr9P22690_001	Banana	nucleus, plastid	34.23	48.11
Solyc08g006530.2.1	Tomato	nucleus	37.65	44.13
Solyc12g096500.1.1	Tomato	nucleus	38.14	43.58
Solyc07g006630.2.1	Tomato	nucleus	35.7	37.82
HORVU0Hr1G022380.1	Barley	cytosol	15.65	22.54
Solyc09g074560.2.1	Tomato	nucleus	18.34	20.11
Solyc05g020020.2.1	Tomato	nucleus	19.56	19.51
Solyc07g045180.2.1	Tomato	nucleus	19.8	19.38
Solyc05g046040.1.1	Tomato	nucleus	18.83	18.38
Solyc05g024010.2.1	Tomato	nucleus	18.58	16.81
Solyc12g006240.1.1	Tomato	nucleus	10.02	15.24
Solyc04g007470.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	16.38	14.11

Protein Annotations

MapMan:15.5.1.2	InterPro:CCT_domain	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150
GO:GO:0008270	GO:GO:0009416	GO:GO:0009628	GO:GO:0009791	GO:GO:0009908	GO:GO:0009909
InterPro:IPR000315	InterPro:IPR010402	UniProt:K4BCA3	PFAM:PF00643	PFAM:PF06203	PFscan:PS50119
PFscan:PS51017	PANTHER:PTHR31319	PANTHER:PTHR31319:SF39	SMART:SM00336	EnsemblPlantsGene:Solyc02g089520.1	EnsemblPlants:Solyc02g089520.1.1
UniParc:UPI0002768C50	InterPro:Znf_B-box	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:-:51314208..51315980

Molecular Weight (calculated)

45679.0 Da

IEP (calculated)

4.887

GRAVY (calculated)

-0.630

Length

409 amino acids

Sequence
(BLAST)

001: MLKKENSGGL DGSSNYWARV CDSCRSVTCT IYCQADSAYL CADCDARIHA ASLVTSRHKR VWVCEACERA PAAFLCKADA ASLCASCDAD IHSANPLAHR
101: HHRIPIITIP GTLYGPPAVE TVGGDSMMIS GSTGEGTEDD GFLSLTQDAD DTIIDEEDED EDEAASWLLL NHPVKNNNKN NVNNNNNQTN NYDMLFGGEV
201: VDDYLDLAEY GGDSQFNDQY NVNQQQQQYF VPQMSYGGDS VVPVQDGQGK PLIFYQQQQQ QQQSHHQNFQ LGMEYDNSNT RLGYPASMSH SVSVVSMDVS
301: VVPESALCET SNSQPRPQKG TIELFSGHPI QIPLLTPMDR EARVLRYREK KKNRKFEKTI RYASRKAYAE TRPRIKGRFA KRTDVEAEVD QMFSTQLMTD
401: SSYRIVPSF

Best Arabidopsis Sequence Match ( AT3G02380.1 )
(BLAST)

001: MLKEESNESG TWARACDTCR SAACTVYCEA DSAYLCTTCD ARVHAANRVA SRHERVRVCQ SCESAPAAFL CKADAASLCT ACDAEIHSAN PLARRHQRVP
101: ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ
201: QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY
301: ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF

Arabidopsis Description

COL2Zinc finger protein CONSTANS-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q96502]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.