Factsheet for Solyc07g006630.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070680	Potato	nucleus	92.75	92.99
Solyc12g096500.1.1	Tomato	nucleus	43.78	47.21
Solyc08g006530.2.1	Tomato	nucleus	39.38	43.55
Solyc02g089540.2.1	Tomato	nucleus	40.67	40.15
Solyc02g089500.2.1	Tomato	nucleus	13.99	38.03
TraesCS6D01G269500.1	Wheat	nucleus	34.2	35.77
Solyc02g089520.1.1	Tomato	nucleus	37.82	35.7
TraesCS6B01G319500.1	Wheat	nucleus	33.94	35.41
TraesCS6A01G289400.1	Wheat	nucleus	33.68	35.23
Os06t0275000-01	Rice	mitochondrion	33.94	33.16
EER88227	Sorghum	nucleus	35.23	33.09
Zm00001d045735_P002	Maize	extracellular, vacuole	35.75	32.24
OQU85473	Sorghum	nucleus	30.05	31.69
TraesCS7B01G118300.1	Wheat	nucleus	30.31	30.55
TraesCS7D01G213000.2	Wheat	nucleus	30.31	30.55
TraesCS7A01G211300.1	Wheat	nucleus	30.31	30.39
Solyc05g020020.2.1	Tomato	nucleus	19.43	18.29
Solyc09g074560.2.1	Tomato	nucleus	17.62	18.23
Solyc07g045180.2.1	Tomato	nucleus	19.43	17.94
Solyc05g046040.1.1	Tomato	nucleus	18.39	16.95
Solyc05g024010.2.1	Tomato	nucleus	19.17	16.37
Solyc12g006240.1.1	Tomato	nucleus	9.59	13.75
Solyc04g007470.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	14.77	12.0

Protein Annotations

MapMan:15.5.1.2	UniProt:B2MW87	InterPro:CCT_domain	EMBL:EU636698	GO:GO:0000003	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009416	GO:GO:0009628	GO:GO:0009791	GO:GO:0009908	GO:GO:0009909	GO:GO:0009987
GO:GO:0045892	GO:GO:0048571	GO:GO:0048572	GO:GO:0048576	GO:GO:0048579	EMBL:GQ261228
InterPro:IPR000315	InterPro:IPR010402	PFAM:PF00643	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017
PANTHER:PTHR31319	PANTHER:PTHR31319:SF39	SMART:SM00336	EnsemblPlantsGene:Solyc07g006630.2	EnsemblPlants:Solyc07g006630.2.1	UniParc:UPI0001741F61
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

CONSTANS-like protein [Source:UniProtKB/TrEMBL;Acc:B2MW87]

Coordinates

chr7:-:1494827..1496702

Molecular Weight (calculated)

42605.9 Da

IEP (calculated)

6.818

GRAVY (calculated)

-0.364

Length

386 amino acids

Sequence
(BLAST)

001: MGIFREAPNC FPGGWNIGAA ARMAKSCEYC HLAAALVFCR TDNTFVCLSC DTRLHARHER VWVCEVCEQA AASVTCRADA AALCVACDRD IHSANPLARR
101: HERVPVVPFY DPVESVVKST AATLLVSING TTTTATTTAT ITPELGKVDT CIGHHENNND PWIPPNTITS KLPLNTEMKG MDFIFTDSEN FLDFDYPACV
201: DTQSQPHYNS SNDSVVPVQA NTPIKSLPFH HQEKHFEIDF TQSHIKSYNT PSLSVSSSSL DVGIVPDGSS ISEISYPYIR TMNNSNSSID LSNSANHQGE
301: KLLGLDREAR VLRYREKKKN RKFEKTIRYA SRKAYAETRP RIKGRFAKRT DGSAGAGEFD DVDGIFSGTD FIAAESRYGV VPSFLT

Best Arabidopsis Sequence Match ( AT5G57660.1 )
(BLAST)

001: MGFGLESIKS ISGGWGAAAR SCDACKSVTA AVFCRVDSAF LCIACDTRIH SFTRHERVWV CEVCEQAPAA VTCKADAAAL CVSCDADIHS ANPLASRHER
101: VPVETFFDSA ETAVAKISAS STFGILGSST TVDLTAVPVM ADDLGLCPWL LPNDFNEPAK IEIGTENMKG SSDFMFSDFD RLIDFEFPNS FNHHQNNAGG
201: DSLVPVQTKT EPLPLTNNDH CFDIDFCRSK LSAFTYPSQS VSHSVSTSSI EYGVVPDGNT NNSVNRSTIT SSTTGGDHQA SSMDREARVL RYREKRKNRK
301: FEKTIRYASR KAYAESRPRI KGRFAKRTET ENDDIFLSHV YASAAHAQYG VVPTF

Arabidopsis Description

COL5Zinc finger protein CONSTANS-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHH8]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.