Factsheet for PGSC0003DMT400070680

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g006630.2.1	Tomato	nucleus	92.99	92.75
PGSC0003DMT400075520	Potato	nucleus	41.82	45.1
PGSC0003DMT400067657	Potato	nucleus	38.44	42.65
PGSC0003DMT400026065	Potato	nucleus	40.78	38.01
PGSC0003DMT400026068	Potato	nucleus	39.48	37.53
TraesCS6D01G269500.1	Wheat	nucleus	34.03	35.5
TraesCS6B01G319500.1	Wheat	nucleus	33.77	35.14
TraesCS6A01G289400.1	Wheat	nucleus	33.51	34.96
PGSC0003DMT400068637	Potato	nucleus	23.38	33.96
PGSC0003DMT400016342	Potato	nucleus	23.12	33.71
Os06t0275000-01	Rice	mitochondrion	34.29	33.42
EER88227	Sorghum	nucleus	35.06	32.85
Zm00001d045735_P002	Maize	extracellular, vacuole	36.1	32.48
OQU85473	Sorghum	nucleus	30.65	32.24
PGSC0003DMT400092769	Potato	nucleus	21.56	32.05
TraesCS7B01G118300.1	Wheat	nucleus	30.39	30.55
TraesCS7D01G213000.2	Wheat	nucleus	30.13	30.29
TraesCS7A01G211300.1	Wheat	nucleus	30.13	30.13
PGSC0003DMT400044878	Potato	nucleus	20.0	18.73
PGSC0003DMT400074143	Potato	nucleus	19.74	18.63
PGSC0003DMT400029591	Potato	nucleus	18.18	18.47
PGSC0003DMT400013624	Potato	nucleus	19.74	18.4
PGSC0003DMT400003198	Potato	nucleus	18.44	16.82
PGSC0003DMT400065377	Potato	nucleus	19.74	16.78
PGSC0003DMT400015373	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	15.58	12.27

Protein Annotations

EntrezGene:102582832	MapMan:15.5.1.2	InterPro:CCT_domain	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009628
GO:GO:0009791	GO:GO:0009908	GO:GO:0009909	GO:GO:0009987	GO:GO:0045892	GO:GO:0048571
GO:GO:0048572	GO:GO:0048576	GO:GO:0048579	InterPro:IPR000315	InterPro:IPR010402	EMBL:KX576513
UniProt:M1CMJ0	PFAM:PF00643	PFAM:PF06203	EnsemblPlantsGene:PGSC0003DMG400027475	PGSC:PGSC0003DMG400027475	EnsemblPlants:PGSC0003DMT400070680
PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31319	PANTHER:PTHR31319:SF39	SMART:SM00336	UniParc:UPI000296DC2F
RefSeq:XP_006343545.1	InterPro:Znf_B-box	SEG:seg	:	:	:

Description

CONSTANS [Source:PGSC_GENE;Acc:PGSC0003DMG400027475]

Coordinates

chr7:-:2275710..2277328

Molecular Weight (calculated)

42405.7 Da

IEP (calculated)

6.501

GRAVY (calculated)

-0.331

Length

385 amino acids

Sequence
(BLAST)

001: MGIIREAPNC FPGGWNTGAA AQMAKSCEYC HLAAALVFCR TDNTFVCLSC DTRLHAHHER VWVCEVCEQA AASVTCRADA AALCVACDRD IHSANPLAQR
101: HERVPVVPFY DPVESVVKST AATLLVSITD TTTTTMTTTT GIAPALSKVD ACIGHHDNNN DPWIPPNTIT SKLPLTTEMK AMDFIFTDSE NFLDFDYPVS
201: VDTQSQPHYN SANDSVVPVQ TNTAIKSLPF HHQEKHFEID FTQSHIKSYN TPSLSVSSSS LDVGIVPDGS SISEISYPYM RTMNNSNSSI DLSNSANHQG
301: EKLLGLDREA RVLRYREKKK NRKFEKTIRY ASRKAYAETR PRIKGRFAKR TDGGAGEFDD VDGIFSGAEF IAADSRYGVV PSFLT

Best Arabidopsis Sequence Match ( AT5G57660.1 )
(BLAST)

001: MGFGLESIKS ISGGWGAAAR SCDACKSVTA AVFCRVDSAF LCIACDTRIH SFTRHERVWV CEVCEQAPAA VTCKADAAAL CVSCDADIHS ANPLASRHER
101: VPVETFFDSA ETAVAKISAS STFGILGSST TVDLTAVPVM ADDLGLCPWL LPNDFNEPAK IEIGTENMKG SSDFMFSDFD RLIDFEFPNS FNHHQNNAGG
201: DSLVPVQTKT EPLPLTNNDH CFDIDFCRSK LSAFTYPSQS VSHSVSTSSI EYGVVPDGNT NNSVNRSTIT SSTTGGDHQA SSMDREARVL RYREKRKNRK
301: FEKTIRYASR KAYAESRPRI KGRFAKRTET ENDDIFLSHV YASAAHAQYG VVPTF

Arabidopsis Description

COL5Zinc finger protein CONSTANS-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHH8]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.