Factsheet for PGSC0003DMT400003198

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g046040.1.1	Tomato	nucleus	93.6	94.27
KRH26833	Soybean	nucleus	48.34	48.23
KRH22524	Soybean	nucleus	48.1	47.99
VIT_12s0059g02500.t01	Wine grape	nucleus	48.1	46.77
AT4G15250.1	Thale cress	nucleus	35.78	45.76
AT3G21880.2	Thale cress	nucleus	38.63	44.29
CDY64255	Canola	nucleus	38.15	43.4
Bra023858.1-P	Field mustard	nucleus	38.63	42.23
CDY55657	Canola	nucleus	38.63	42.23
PGSC0003DMT400013624	Potato	nucleus	35.78	36.56
PGSC0003DMT400074143	Potato	nucleus	35.07	36.27
PGSC0003DMT400044878	Potato	nucleus	32.7	33.58
VIT_19s0014g05120.t01	Wine grape	nucleus	26.07	29.33
PGSC0003DMT400075520	Potato	nucleus	19.43	22.97
PGSC0003DMT400067657	Potato	nucleus	18.72	22.77
PGSC0003DMT400029591	Potato	nucleus	18.48	20.58
PGSC0003DMT400065377	Potato	nucleus	21.56	20.09
PGSC0003DMT400026068	Potato	nucleus	18.72	19.51
PGSC0003DMT400026065	Potato	nucleus	18.72	19.13
PGSC0003DMT400070680	Potato	nucleus	16.82	18.44
PGSC0003DMT400015373	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	21.33	18.4
PGSC0003DMT400068637	Potato	nucleus	10.66	16.98
PGSC0003DMT400016342	Potato	nucleus	10.43	16.67
PGSC0003DMT400092769	Potato	nucleus	9.48	15.44

Protein Annotations

EntrezGene:102594696	MapMan:15.5.1.2	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	InterPro:IPR000315
InterPro:IPR010402	EMBL:KX576522	UniProt:M0ZL89	PFAM:PF00643	PFAM:PF06203	EnsemblPlantsGene:PGSC0003DMG400001263
PGSC:PGSC0003DMG400001263	EnsemblPlants:PGSC0003DMT400003198	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31717	PANTHER:PTHR31717:SF27
SMART:SM00336	UniParc:UPI000294AE06	RefSeq:XP_006356928.1	InterPro:Znf_B-box	SEG:seg	:

Description

CONSTANS-like zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400001263]

Coordinates

chr5:+:42736399..42738599

Molecular Weight (calculated)

46506.4 Da

IEP (calculated)

4.912

GRAVY (calculated)

-0.508

Length

422 amino acids

Sequence
(BLAST)

001: MDPVCDLCSE ARAVVYCKSD SARLCLQCDD YVHSPNLISR RHSRSFICDK CNSQPSVVRC MDEAISLCER CDWDGNGCIG TGHRLKKLNP YTGCPSPDEF
101: TKMLSQVLEM PIGTDTNFGS FGNSFCSSLS INENNSSLET KVNEGSFVPS KLNELASNYK FEAAWAIPLE PNYLTSYHPD LTPFSEGSAL SKKDCPIKDL
201: GLQEGDVLSK GVDFDDVTLD FNCGYEILPN SLPTGFSDEN KELDCLVMEK NSSVTGSNNV ETSHEATSSV QQEYMGLQSS QMSAAASSTN LLQTMSANAN
301: CMLMNSNCNG SIGALPFLPA PIHPSMSLSL SNITGESCAE QDCGLSPGFL NEAPWDLSLE NCPQKRHEAK MRYNEKKKTR TFGKQIRYAS RKARADTRRR
401: VKGRFVKAGE AYDYDPSETR DF

Best Arabidopsis Sequence Match ( AT3G21880.2 )
(BLAST)

001: MSPSMEPKCD HCATSQALIY CKSDLAKLCL NCDVHVHSAN PLSHRHIRSL ICEKCFSQPA AIRCLDEKVS YCQGCHWHES NCSELGHRVQ SLNPFSGCPS
101: PTDFNRMWSS ILEPPVSGLL SPFVGSFPLN DLNNTMFDTA YSMVPHNISY TQNFSDNLSF FSTESKGYPD MVLKLEEGEE DLCEGLNLDD APLNFDVGDD
201: IIGCSSEVHI EPDHTVPNCL LIDKTNTSSF TGSNFTVDKA LEASPPGQQM NINTGLQLPL SPVLFGQIHP SLNITGENNA ADYQDCGMSP GFIMSEAPWE
301: TNFEVSCPQA RNEAKLRYKE KKLKRSFGKQ IRYASRKARA DTRKRVKGRF VKAGDSYDYD PSSPTTNN

Arabidopsis Description

B-box type zinc finger protein with CCT domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LPX4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.