Factsheet for PGSC0003DMT400068637

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016342	Potato	nucleus	86.79	87.12
PGSC0003DMT400092769	Potato	nucleus	81.13	83.01
PGSC0003DMT400075520	Potato	nucleus	81.89	60.78
PGSC0003DMT400067657	Potato	nucleus	55.09	42.07
KRH52295	Soybean	nucleus, plastid	37.74	32.26
KRH61628	Soybean	nucleus, plastid	36.98	31.72
PGSC0003DMT400026068	Potato	nucleus	36.6	23.95
Os09t0240200-01	Rice	nucleus	30.19	23.88
PGSC0003DMT400026065	Potato	nucleus	36.98	23.73
PGSC0003DMT400070680	Potato	nucleus	33.96	23.38
TraesCS5A01G166100.1	Wheat	nucleus	28.68	23.31
TraesCS5D01G170700.1	Wheat	nucleus	28.3	23.08
TraesCS5B01G163500.1	Wheat	nucleus	27.55	22.46
PGSC0003DMT400074143	Potato	nucleus	18.11	11.76
PGSC0003DMT400013624	Potato	nucleus	17.74	11.38
PGSC0003DMT400044878	Potato	nucleus	17.36	11.19
PGSC0003DMT400003198	Potato	nucleus	16.98	10.66
PGSC0003DMT400029591	Potato	nucleus	13.96	9.76
PGSC0003DMT400065377	Potato	nucleus	16.23	9.49
PGSC0003DMT400015373	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	12.45	6.75

Protein Annotations

EnsemblPlants:PGSC0003DMT400068637	EnsemblPlantsGene:PGSC0003DMG400026690	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:CCT_domain	InterPro:IPR010402	PANTHER:PTHR31319
PANTHER:PTHR31319:SF14	PFAM:PF06203	PFscan:PS51017	PGSC:PGSC0003DMG400026690	SEG:seg	UniParc:UPI0002956DEE
UniProt:M1CJB2	MapMan:35.1	:	:	:	:

Description

CONSTANS [Source:PGSC_GENE;Acc:PGSC0003DMG400026690]

Coordinates

chr1:+:44702628..44704151

Molecular Weight (calculated)

29721.1 Da

IEP (calculated)

4.602

GRAVY (calculated)

-0.745

Length

265 amino acids

Sequence
(BLAST)

001: MAEPVAYEDK CWRVCLRCTG EKSHGGDDVD ADAVDDEKYF DSTDENPSQP EEEAEATSWI LPTPKEGNDQ IYYLFNDMDS YLDIDLMSCE QKPHILHHQQ
101: HQHGHYSSDR VVPVQNNNET STHLPGPVVD GFPTYEIDFV GSKPYMYNFT SQSISQSVSS SFLDVGVVPD HSAMTDVSNT FVMNSSAGAG ADADADADAV
201: PNAVSGLDRE ARVMRYREKR KNRKFEKTIR YSSREAYAET RPRIKGRFAK RTEIKIDSLI AADAS

Best Arabidopsis Sequence Match ( AT5G57660.1 )
(BLAST)

001: MGFGLESIKS ISGGWGAAAR SCDACKSVTA AVFCRVDSAF LCIACDTRIH SFTRHERVWV CEVCEQAPAA VTCKADAAAL CVSCDADIHS ANPLASRHER
101: VPVETFFDSA ETAVAKISAS STFGILGSST TVDLTAVPVM ADDLGLCPWL LPNDFNEPAK IEIGTENMKG SSDFMFSDFD RLIDFEFPNS FNHHQNNAGG
201: DSLVPVQTKT EPLPLTNNDH CFDIDFCRSK LSAFTYPSQS VSHSVSTSSI EYGVVPDGNT NNSVNRSTIT SSTTGGDHQA SSMDREARVL RYREKRKNRK
301: FEKTIRYASR KAYAESRPRI KGRFAKRTET ENDDIFLSHV YASAAHAQYG VVPTF

Arabidopsis Description

COL5Zinc finger protein CONSTANS-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHH8]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.