Factsheet for PGSC0003DMT400092769

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016342	Potato	nucleus	84.94	83.33
PGSC0003DMT400068637	Potato	nucleus	83.01	81.13
PGSC0003DMT400075520	Potato	nucleus	76.06	55.18
PGSC0003DMT400067657	Potato	nucleus	52.12	38.9
KRH52295	Soybean	nucleus, plastid	35.14	29.35
KRH61628	Soybean	nucleus, plastid	34.75	29.13
PGSC0003DMT400026068	Potato	nucleus	34.36	21.98
PGSC0003DMT400070680	Potato	nucleus	32.05	21.56
PGSC0003DMT400026065	Potato	nucleus	33.98	21.31
Os09t0240200-01	Rice	nucleus	27.41	21.19
TraesCS5A01G166100.1	Wheat	nucleus	25.87	20.55
TraesCS5D01G170700.1	Wheat	nucleus	25.48	20.31
TraesCS5B01G163500.1	Wheat	nucleus	24.71	19.69
PGSC0003DMT400074143	Potato	nucleus	16.6	10.54
PGSC0003DMT400013624	Potato	nucleus	16.6	10.41
PGSC0003DMT400044878	Potato	nucleus	15.44	9.73
PGSC0003DMT400003198	Potato	nucleus	15.44	9.48
PGSC0003DMT400029591	Potato	nucleus	13.13	8.97
PGSC0003DMT400065377	Potato	nucleus	14.67	8.39
PGSC0003DMT400015373	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	13.13	6.95

Protein Annotations

EnsemblPlants:PGSC0003DMT400092769	EnsemblPlantsGene:PGSC0003DMG400042340	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:CCT_domain	InterPro:IPR010402	PANTHER:PTHR31319
PANTHER:PTHR31319:SF14	PFAM:PF06203	PFscan:PS51017	PGSC:PGSC0003DMG400042340	SEG:seg	UniParc:UPI0002965946
UniProt:M1DQH7	MapMan:35.1	:	:	:	:

Description

CONSTANS [Source:PGSC_GENE;Acc:PGSC0003DMG400042340]

Coordinates

chr12:+:18944287..18945393

Molecular Weight (calculated)

29131.4 Da

IEP (calculated)

5.018

GRAVY (calculated)

-0.774

Length

259 amino acids

Sequence
(BLAST)

001: MNLSPNFDKW YVYALRNTLG PSQPLPSNYR TGERSHGGDD VDANVVDDEK YFDSTDENPS QPEEEAEAAS WILPTLKEGN DQIYYLFNDM DSYLDIDLMS
101: CEQKSHILHH QQHQHGHCSF DGVVPVQNNN ETSTHLPGPV VDGFPTYEID FAGSKPYMYN FTSQSISQSV SSSSLDVGVV PDHSAMTDVS NTFVMNSSAG
201: AGAGADADVV PNAVSGLDRE ARVMRYREKR KNRKFEKTIR YSSREAYAET RHRIKGRFR

Best Arabidopsis Sequence Match ( AT5G24930.1 )
(BLAST)

001: MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVSS
101: DGSVKHTAVN FLDDCYFSDI DGNGSREEEE EEAASWLLLP NPKTTTTATA GIVAVTSAEE VPGDSPEMNT GQQYLFSDPD PYLDLDYGNV DPKVESLEQN
201: SSGTDGVVPV ENRTVRIPTV NENCFEMDFT GGSKGFTYGG GYNCISHSVS SSSMEVGVVP DGGSVADVSY PYGGPATSGA DPGTQRAVPL TSAEREARVM
301: RYREKRKNRK FEKTIRYASR KAYAEMRPRI KGRFAKRTDT NESNDVVGHG GIFSGFGLVP TF

Arabidopsis Description

COL4Zinc finger protein CONSTANS-LIKE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q940T9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.