CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61628	Soybean	nucleus, plastid	95.16	95.47
KRH18980	Soybean	nucleus	54.84	46.58
KRH02915	Soybean	nucleus	54.84	45.45
KRH01455	Soybean	nucleus	47.74	42.05
KRH45169	Soybean	nucleus	45.81	40.8
KRH18308	Soybean	nucleus	47.42	40.72
KRG93763	Soybean	nucleus	48.06	40.71
PGSC0003DMT400068637	Potato	nucleus	32.26	37.74
PGSC0003DMT400016342	Potato	nucleus	30.97	36.36
PGSC0003DMT400092769	Potato	nucleus	29.35	35.14
TraesCS5A01G166100.1	Wheat	nucleus	33.55	31.9
TraesCS5D01G170700.1	Wheat	nucleus	33.23	31.69
TraesCS5B01G163500.1	Wheat	nucleus	32.9	31.38
Os09t0240200-01	Rice	nucleus	32.9	30.45
KRG96381	Soybean	nucleus	23.55	20.8
KRH31920	Soybean	nucleus	23.23	20.69
KRH16989	Soybean	nucleus	27.42	20.68
KRH68113	Soybean	nucleus	23.23	20.63
KRH71535	Soybean	nucleus	22.58	20.59
KRH72628	Soybean	nucleus	26.13	20.0
KRG89998	Soybean	nucleus	25.48	19.32
KRH17709	Soybean	nucleus	24.84	18.83
KRH26833	Soybean	nucleus	25.16	18.44
KRH06865	Soybean	nucleus	22.58	18.37
KRH22524	Soybean	nucleus	24.84	18.2
KRG94656	Soybean	nucleus	21.94	17.66
KRG90917	Soybean	nucleus	15.81	11.19
KRH35868	Soybean	nucleus	14.84	10.5

Protein Annotations

EntrezGene:100804201	MapMan:15.5.1.2	UniProt:A0A0R4J3G9	EMBL:ACUP02003417	InterPro:CCT_domain	EnsemblPlantsGene:GLYMA_06G059600
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0008270	GO:GO:0046872	InterPro:IPR000315	InterPro:IPR010402	EnsemblPlants:KRH52295
ProteinID:KRH52295	ProteinID:KRH52295.1	PFAM:PF00643	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017
PANTHER:PTHR31319	PANTHER:PTHR31319:SF39	SMART:SM00336	UniParc:UPI000189D753	InterPro:Znf_B-box	SEG:seg

Description

hypothetical protein

Coordinates

chr6:+:4519732..4521199

Molecular Weight (calculated)

33959.7 Da

IEP (calculated)

7.642

GRAVY (calculated)

-0.428

Length

310 amino acids

Sequence
(BLAST)

001: MASKLCDSCK SATATLYCRP DAAFLCGACD SKVHAANKLA SRHPRVVLCE VCEQAPAHVT CKADAAALCL ACDRDIHSAN PLASRHERIP VTPFFESVHS
101: VKASSPINFH HRFFSDADAD ADVSTEEAEA ASWLLPNPKT DLNSSQYLFS ETEPVPYIDL DYAAMDPKTE QKSSATADGV VPVQSNFEPF TYGYKYNTTL
201: SQSQSHMSQS VSSPSSMEVG VVPDGNTMSE ISNCSYSKVA PVTVTAQFSA ADREARVLRY REKRKNRKFE KTIRYASRKA YAETRPRIKG RFAKRTDADP
301: LAGYGVVPSC

Best Arabidopsis Sequence Match ( AT5G24930.1 )
(BLAST)

001: MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVSS
101: DGSVKHTAVN FLDDCYFSDI DGNGSREEEE EEAASWLLLP NPKTTTTATA GIVAVTSAEE VPGDSPEMNT GQQYLFSDPD PYLDLDYGNV DPKVESLEQN
201: SSGTDGVVPV ENRTVRIPTV NENCFEMDFT GGSKGFTYGG GYNCISHSVS SSSMEVGVVP DGGSVADVSY PYGGPATSGA DPGTQRAVPL TSAEREARVM
301: RYREKRKNRK FEKTIRYASR KAYAEMRPRI KGRFAKRTDT NESNDVVGHG GIFSGFGLVP TF

Arabidopsis Description

COL4Zinc finger protein CONSTANS-LIKE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q940T9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.