CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35868	Soybean	nucleus	92.47	92.47
VIT_01s0011g04240.t01	Wine grape	nucleus	40.64	49.86
CDY04213	Canola	nucleus	29.68	38.69
AT1G68190.2	Thale cress	extracellular, golgi, vacuole	31.28	35.58
Solyc04g007470.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	37.21	34.32
PGSC0003DMT400015373	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	37.67	33.74
CDY07393	Canola	nucleus	29.91	24.44
KRH16989	Soybean	nucleus	21.46	22.87
KRH72628	Soybean	nucleus	21.0	22.72
KRG89998	Soybean	nucleus	20.78	22.25
KRH17709	Soybean	nucleus	20.78	22.25
KRH26833	Soybean	nucleus	20.55	21.28
KRH22524	Soybean	nucleus	20.32	21.04
KRH68113	Soybean	nucleus	14.16	17.77
KRG96381	Soybean	nucleus	14.16	17.66
KRH31920	Soybean	nucleus	13.93	17.53
KRH71535	Soybean	nucleus	13.47	17.35
KRG94656	Soybean	nucleus	14.84	16.88
KRG93763	Soybean	nucleus	13.7	16.39
KRH18308	Soybean	nucleus	13.47	16.34
KRH06865	Soybean	nucleus	14.16	16.27
KRH61628	Soybean	nucleus, plastid	11.19	15.86
KRH52295	Soybean	nucleus, plastid	11.19	15.81
KRH18980	Soybean	nucleus	12.56	15.07
KRH02915	Soybean	nucleus	12.33	14.44
KRH01455	Soybean	nucleus	11.19	13.92
KRH45169	Soybean	nucleus	10.96	13.79

Protein Annotations

EMBL:ACUP02012652	EnsemblPlants:KRG90917	EnsemblPlantsGene:GLYMA_20G121700	EntrezGene:100796028	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315	InterPro:Znf_B-box
PANTHER:PTHR31717	PANTHER:PTHR31717:SF40	PFscan:PS50119	ProteinID:KRG90917	ProteinID:KRG90917.1	SEG:seg
SMART:SM00336	UniParc:UPI000233F497	UniProt:I1NFQ8	MapMan:15.5.1.2	:	:

Description

hypothetical protein

Coordinates

chr20:+:36425481..36435167

Molecular Weight (calculated)

48774.2 Da

IEP (calculated)

4.556

GRAVY (calculated)

-0.409

Length

438 amino acids

Sequence
(BLAST)

001: MEKVCEFCTA LRPLVYCKAD AAYLCLSCDS KVHLANAVSG RHLRNFVCHS CGYHLAYVLC LEHKMLICRD CDQKLHNISL PHKKRAIRSF MGCPSAKDFA
101: ALWGFESNEI ENSATQDQFG SVSCVSADLN VAQVSGKPGI QTGIPSMPSG AKFDGGGSTS QQGQILYSDQ ERQTILQQII DLKMLQQNED IDYLAKINRL
201: QEKDLSPSVY HTLKKLDDKF NEQAQKSQDL ATNVLEKDCP TVELNPETLP STFSQFDNLY SSSIIDLPLH GELFWTCRSP LQSNQLWSQN IQDLGICKEL
301: VCQDDFNIPD VDLTFQNFEE LFGGDQDSIR ILLDDQDVSC SSLEKDKSVG KSDIDNPSAM EESSAAASIT ISQSDLDNKD MNPLSQYRPR SMDPALAIRP
401: FDSTIPFSVL RFNEESSCTS HDDSALSPYS ERKAYSGS

Best Arabidopsis Sequence Match ( AT1G68190.3 )
(BLAST)

001: MLCIIIIENM ERVCEFCKAY RAVVYCIADT ANLCLTCDAK VHSANSLSGR HLRTVLCDSC KNQPCVVRCF DHKMFLCHGC NDKFHGGGSS EHRRRDLRCY
101: TGCPPAKDFA VMWGFRVMDD DDDVSLEQSF RMVKPKVQRE GGFILEQILE LEKVQLREEN GSSSLTERGD PSPLELPKKP EEQLIDLPQT GKELVVDFSH
201: LSSSSTLGDS FWECKSPYNK NNQLWHQNIQ DIGVCEDTIC SDDDFQIPDI DLTFRNFEEQ FGADPEPIAD SNNVFFVSSL DKSHEMKTFS SSFNNPIFAP
301: KPASSTISFS SSETDNPYSH SEEVISFCPS LSNNTRQKVI TRLKEKKRAR VEEKKA

Arabidopsis Description

B-box zinc finger family protein [Source:TAIR;Acc:AT1G68190]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.