Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G57660.1 | KRH44613 | AT3G21150.1 | 21798944 |
| AT5G57660.1 | KRH47291 | AT3G21150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH02915 | Soybean | nucleus | 92.88 | 90.64 |
| CDY02749 | Canola | nucleus, plastid | 43.84 | 61.78 |
| CDY58843 | Canola | nucleus, plastid | 54.25 | 57.89 |
| Bra020425.1-P | Field mustard | nucleus, plastid | 53.97 | 57.6 |
| AT5G57660.1 | Thale cress | nucleus, plastid | 55.89 | 57.46 |
| CDY25892 | Canola | nucleus | 51.78 | 56.76 |
| Bra002709.1-P | Field mustard | nucleus | 32.88 | 55.05 |
| CDY49730 | Canola | nucleus | 32.88 | 55.05 |
| KRH52295 | Soybean | nucleus, plastid | 46.58 | 54.84 |
| KRH61628 | Soybean | nucleus, plastid | 46.3 | 54.69 |
| KRG93763 | Soybean | nucleus | 42.47 | 42.35 |
| KRH18308 | Soybean | nucleus | 41.64 | 42.11 |
| KRH45169 | Soybean | nucleus | 39.73 | 41.67 |
| KRH01455 | Soybean | nucleus | 39.73 | 41.19 |
| TraesCS6A01G289400.1 | Wheat | nucleus | 37.81 | 37.4 |
| TraesCS6B01G319500.1 | Wheat | nucleus | 37.81 | 37.3 |
| TraesCS6D01G269500.1 | Wheat | nucleus | 37.53 | 37.13 |
| EER88227 | Sorghum | nucleus | 37.81 | 33.58 |
| Os06t0275000-01 | Rice | mitochondrion | 36.16 | 33.42 |
| Zm00001d045735_P002 | Maize | extracellular, vacuole | 39.18 | 33.41 |
| TraesCS7D01G213000.2 | Wheat | nucleus | 34.25 | 32.64 |
| TraesCS7A01G211300.1 | Wheat | nucleus | 33.7 | 31.95 |
| OQU85473 | Sorghum | nucleus | 31.78 | 31.69 |
| TraesCS7B01G118300.1 | Wheat | nucleus | 32.88 | 31.33 |
| KRH31920 | Soybean | nucleus | 21.92 | 22.99 |
| KRG96381 | Soybean | nucleus | 21.64 | 22.51 |
| KRH71535 | Soybean | nucleus | 20.82 | 22.35 |
| KRH68113 | Soybean | nucleus | 21.1 | 22.06 |
| KRH72628 | Soybean | nucleus | 23.56 | 21.23 |
| KRH16989 | Soybean | nucleus | 23.84 | 21.17 |
| KRG89998 | Soybean | nucleus | 22.47 | 20.05 |
| KRH26833 | Soybean | nucleus | 22.74 | 19.62 |
| KRH17709 | Soybean | nucleus | 21.92 | 19.56 |
| KRH06865 | Soybean | nucleus | 20.0 | 19.16 |
| KRH22524 | Soybean | nucleus | 21.92 | 18.91 |
| KRG94656 | Soybean | nucleus | 19.18 | 18.18 |
| KRG90917 | Soybean | nucleus | 15.07 | 12.56 |
| KRH35868 | Soybean | nucleus | 14.52 | 12.1 |
Protein Annotations
| EntrezGene:100792197 | MapMan:15.5.1.2 | EMBL:ACUP02008154 | InterPro:CCT_domain | UniProt:D0EP05 | EnsemblPlantsGene:GLYMA_13G093800 |
| GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008270 | GO:GO:0009416 |
| GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009909 | EMBL:GQ864264 | InterPro:IPR000315 |
| InterPro:IPR010402 | EnsemblPlants:KRH18980 | ProteinID:KRH18980 | ProteinID:KRH18980.1 | PFAM:PF00643 | PFAM:PF06203 |
| PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31319 | PANTHER:PTHR31319:SF14 | SMART:SM00336 | UniParc:UPI000189D784 |
| InterPro:Znf_B-box | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr13:-:20903249..20905141
Molecular Weight (calculated)
39875.8 Da
IEP (calculated)
6.655
GRAVY (calculated)
-0.332
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIERGGLKG FRSGWSVPPK KPCDSCKLAS AALFCHLDSA FLCIACDSKI HCANKLASRH ERVWMCEVCE QAPASVTCKA DAAALCVTCD SDIHSANPLA
101: QRHERVPVEP FFDSAESIVK ASATASFGFV VPSDDGAASD VFAPDDSDSA AWLIPNPNFG SKLMDAPEIK SKEIFFSEMD PFLDFDYSNS FQNHNSAVND
201: SVVPVQTKPS LAPPPINNHQ HHHQSETCFD IDFCRSKLSS FNYPSQSLSQ SVSSSSLDVG VVPDGNTVSD MSYSSGIVVS GGQGATQLCG MDREARVLRY
301: REKRKNRKFE KTIRYASRKA YAETRPRIKG RFAKRTEIDS DVERLYSPGA AALMLDTPYG VVPTF
101: QRHERVPVEP FFDSAESIVK ASATASFGFV VPSDDGAASD VFAPDDSDSA AWLIPNPNFG SKLMDAPEIK SKEIFFSEMD PFLDFDYSNS FQNHNSAVND
201: SVVPVQTKPS LAPPPINNHQ HHHQSETCFD IDFCRSKLSS FNYPSQSLSQ SVSSSSLDVG VVPDGNTVSD MSYSSGIVVS GGQGATQLCG MDREARVLRY
301: REKRKNRKFE KTIRYASRKA YAETRPRIKG RFAKRTEIDS DVERLYSPGA AALMLDTPYG VVPTF
001: MGFGLESIKS ISGGWGAAAR SCDACKSVTA AVFCRVDSAF LCIACDTRIH SFTRHERVWV CEVCEQAPAA VTCKADAAAL CVSCDADIHS ANPLASRHER
101: VPVETFFDSA ETAVAKISAS STFGILGSST TVDLTAVPVM ADDLGLCPWL LPNDFNEPAK IEIGTENMKG SSDFMFSDFD RLIDFEFPNS FNHHQNNAGG
201: DSLVPVQTKT EPLPLTNNDH CFDIDFCRSK LSAFTYPSQS VSHSVSTSSI EYGVVPDGNT NNSVNRSTIT SSTTGGDHQA SSMDREARVL RYREKRKNRK
301: FEKTIRYASR KAYAESRPRI KGRFAKRTET ENDDIFLSHV YASAAHAQYG VVPTF
101: VPVETFFDSA ETAVAKISAS STFGILGSST TVDLTAVPVM ADDLGLCPWL LPNDFNEPAK IEIGTENMKG SSDFMFSDFD RLIDFEFPNS FNHHQNNAGG
201: DSLVPVQTKT EPLPLTNNDH CFDIDFCRSK LSAFTYPSQS VSHSVSTSSI EYGVVPDGNT NNSVNRSTIT SSTTGGDHQA SSMDREARVL RYREKRKNRK
301: FEKTIRYASR KAYAESRPRI KGRFAKRTET ENDDIFLSHV YASAAHAQYG VVPTF
Arabidopsis Description
COL5Zinc finger protein CONSTANS-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHH8]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.