Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G57660.1 | KRH44613 | AT3G21150.1 | 21798944 |
| AT5G57660.1 | KRH47291 | AT3G21150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH18980 | Soybean | nucleus | 90.64 | 92.88 |
| CDY02749 | Canola | nucleus, plastid | 43.05 | 62.16 |
| CDY58843 | Canola | nucleus, plastid | 52.67 | 57.6 |
| Bra020425.1-P | Field mustard | nucleus, plastid | 52.41 | 57.31 |
| AT5G57660.1 | Thale cress | nucleus, plastid | 53.74 | 56.62 |
| CDY25892 | Canola | nucleus | 50.0 | 56.16 |
| KRH52295 | Soybean | nucleus, plastid | 45.45 | 54.84 |
| KRH61628 | Soybean | nucleus, plastid | 45.19 | 54.69 |
| Bra002709.1-P | Field mustard | nucleus | 31.55 | 54.13 |
| CDY49730 | Canola | nucleus | 31.55 | 54.13 |
| KRH45169 | Soybean | nucleus | 40.11 | 43.1 |
| KRH01455 | Soybean | nucleus | 40.11 | 42.61 |
| KRH18308 | Soybean | nucleus | 40.37 | 41.83 |
| KRG93763 | Soybean | nucleus | 40.91 | 41.8 |
| TraesCS6A01G289400.1 | Wheat | nucleus | 36.36 | 36.86 |
| TraesCS6B01G319500.1 | Wheat | nucleus | 36.36 | 36.76 |
| TraesCS6D01G269500.1 | Wheat | nucleus | 36.1 | 36.59 |
| Os06t0275000-01 | Rice | mitochondrion | 36.1 | 34.18 |
| EER88227 | Sorghum | nucleus | 37.17 | 33.82 |
| Zm00001d045735_P002 | Maize | extracellular, vacuole | 38.5 | 33.64 |
| TraesCS7D01G213000.2 | Wheat | nucleus | 33.96 | 33.16 |
| TraesCS7A01G211300.1 | Wheat | nucleus | 33.42 | 32.47 |
| TraesCS7B01G118300.1 | Wheat | nucleus | 32.62 | 31.85 |
| OQU85473 | Sorghum | nucleus | 30.75 | 31.42 |
| KRG96381 | Soybean | nucleus | 21.39 | 22.79 |
| KRH31920 | Soybean | nucleus | 20.86 | 22.41 |
| KRH68113 | Soybean | nucleus | 20.86 | 22.35 |
| KRH71535 | Soybean | nucleus | 20.05 | 22.06 |
| KRH72628 | Soybean | nucleus | 23.26 | 21.48 |
| KRH16989 | Soybean | nucleus | 23.53 | 21.41 |
| KRG89998 | Soybean | nucleus | 22.19 | 20.29 |
| KRH17709 | Soybean | nucleus | 21.66 | 19.8 |
| KRH06865 | Soybean | nucleus | 19.79 | 19.42 |
| KRH26833 | Soybean | nucleus | 21.66 | 19.15 |
| KRG94656 | Soybean | nucleus | 18.98 | 18.44 |
| KRH22524 | Soybean | nucleus | 20.86 | 18.44 |
| KRG90917 | Soybean | nucleus | 14.44 | 12.33 |
| KRH35868 | Soybean | nucleus | 13.9 | 11.87 |
Protein Annotations
| EntrezGene:100805693 | MapMan:15.5.1.2 | EMBL:ACUP02010329 | InterPro:CCT_domain | UniProt:D0EP03 | EnsemblPlantsGene:GLYMA_17G066600 |
| GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008270 | GO:GO:0009416 |
| GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009909 | EMBL:GQ864262 | InterPro:IPR000315 |
| InterPro:IPR010402 | EnsemblPlants:KRH02915 | ProteinID:KRH02915 | ProteinID:KRH02915.1 | PFAM:PF00643 | PFAM:PF06203 |
| PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31319 | PANTHER:PTHR31319:SF14 | SMART:SM00336 | UniParc:UPI000189D786 |
| InterPro:Znf_B-box | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr17:+:5146337..5148259
Molecular Weight (calculated)
40708.5 Da
IEP (calculated)
6.306
GRAVY (calculated)
-0.336
Length
374 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIERGGFKG FRSAWSVPPK PCDSCKLASA ALFCRPDSAF LCIACDSNIH CSNKLASRHE RVWMCEVCEQ APAAVTCKAD AAALCVTCDS DIHSANPLAQ
101: RHERVPVEPF FDSAESIVKA SAAATFGFIV PSDDGGASDA FAPDDSDAAA WLIPNPNFGS KLMDAPEIKS KEIFFSEMDP FLDFDYSNSF QNNNSAGNDS
201: VVPVQKPSLA PPLINNHHHH QSETCFDVDF CRSKLSSFNY PSNSLSQSVS SSSLDVGVVP DGNTVSDMSY SFGRNSSDSS GIVVVSGNSV GQGATQLCGM
301: DREARVLRYR EKRKNRKFEK TIRYASRKAY AETRPRIKGR FAKRTEIDSD VERLYSPGPA VLMLDTPYGV VPSF
101: RHERVPVEPF FDSAESIVKA SAAATFGFIV PSDDGGASDA FAPDDSDAAA WLIPNPNFGS KLMDAPEIKS KEIFFSEMDP FLDFDYSNSF QNNNSAGNDS
201: VVPVQKPSLA PPLINNHHHH QSETCFDVDF CRSKLSSFNY PSNSLSQSVS SSSLDVGVVP DGNTVSDMSY SFGRNSSDSS GIVVVSGNSV GQGATQLCGM
301: DREARVLRYR EKRKNRKFEK TIRYASRKAY AETRPRIKGR FAKRTEIDSD VERLYSPGPA VLMLDTPYGV VPSF
001: MGFGLESIKS ISGGWGAAAR SCDACKSVTA AVFCRVDSAF LCIACDTRIH SFTRHERVWV CEVCEQAPAA VTCKADAAAL CVSCDADIHS ANPLASRHER
101: VPVETFFDSA ETAVAKISAS STFGILGSST TVDLTAVPVM ADDLGLCPWL LPNDFNEPAK IEIGTENMKG SSDFMFSDFD RLIDFEFPNS FNHHQNNAGG
201: DSLVPVQTKT EPLPLTNNDH CFDIDFCRSK LSAFTYPSQS VSHSVSTSSI EYGVVPDGNT NNSVNRSTIT SSTTGGDHQA SSMDREARVL RYREKRKNRK
301: FEKTIRYASR KAYAESRPRI KGRFAKRTET ENDDIFLSHV YASAAHAQYG VVPTF
101: VPVETFFDSA ETAVAKISAS STFGILGSST TVDLTAVPVM ADDLGLCPWL LPNDFNEPAK IEIGTENMKG SSDFMFSDFD RLIDFEFPNS FNHHQNNAGG
201: DSLVPVQTKT EPLPLTNNDH CFDIDFCRSK LSAFTYPSQS VSHSVSTSSI EYGVVPDGNT NNSVNRSTIT SSTTGGDHQA SSMDREARVL RYREKRKNRK
301: FEKTIRYASR KAYAESRPRI KGRFAKRTET ENDDIFLSHV YASAAHAQYG VVPTF
Arabidopsis Description
COL5Zinc finger protein CONSTANS-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHH8]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.