CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22524	Soybean	nucleus	93.38	93.38
VIT_12s0059g02500.t01	Wine grape	nucleus	55.79	54.38
Solyc05g046040.1.1	Tomato	nucleus	48.94	49.4
AT4G15250.1	Thale cress	nucleus	38.53	49.39
PGSC0003DMT400003198	Potato	nucleus	48.23	48.34
CDY64255	Canola	nucleus	41.37	47.17
AT3G21880.2	Thale cress	nucleus	40.66	46.74
Bra023858.1-P	Field mustard	nucleus	41.61	45.6
CDY55657	Canola	nucleus	41.61	45.6
KRG89998	Soybean	nucleus	38.77	40.1
KRH72628	Soybean	nucleus	38.06	39.75
KRH16989	Soybean	nucleus	38.53	39.66
KRH17709	Soybean	nucleus	38.3	39.61
VIT_19s0014g05120.t01	Wine grape	nucleus	29.79	33.6
KRH52295	Soybean	nucleus, plastid	18.44	25.16
KRH68113	Soybean	nucleus	20.57	24.93
KRG96381	Soybean	nucleus	20.57	24.79
KRH61628	Soybean	nucleus, plastid	17.97	24.6
KRH31920	Soybean	nucleus	19.39	23.56
KRH71535	Soybean	nucleus	18.91	23.53
KRG94656	Soybean	nucleus	21.28	23.38
KRH06865	Soybean	nucleus	21.04	23.36
KRH18980	Soybean	nucleus	19.62	22.74
KRH18308	Soybean	nucleus	19.15	22.44
KRG93763	Soybean	nucleus	19.39	22.4
KRH01455	Soybean	nucleus	18.2	21.88
KRH02915	Soybean	nucleus	19.15	21.66
KRH45169	Soybean	nucleus	17.49	21.26
KRG90917	Soybean	nucleus	21.28	20.55
KRH35868	Soybean	nucleus	21.04	20.32

Protein Annotations

EntrezGene:100805778	MapMan:15.5.1.2	UniProt:A0A0R0HEE4	EMBL:ACUP02007750	InterPro:CCT_domain	EnsemblPlantsGene:GLYMA_12G196100
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402	EnsemblPlants:KRH26833	ProteinID:KRH26833
ProteinID:KRH26833.1	ProteinID:KRH26834.1	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31717
PANTHER:PTHR31717:SF27	SMART:SM00336	UniParc:UPI0003DEC194	InterPro:Znf_B-box	SEG:seg	:

Description

hypothetical protein

Coordinates

chr12:+:35736691..35741033

Molecular Weight (calculated)

46917.0 Da

IEP (calculated)

5.461

GRAVY (calculated)

-0.481

Length

423 amino acids

Sequence
(BLAST)

001: MDPLCEFCGV VRAVVYCKSD SARLCLHCDG CVHSANSLSR RHSRSLLCDK CNSQPAMIRC MDHKLSLCQG CDWNPNDCSA LGHRRVALNC YTGCPSLAEF
101: SRIWSFVFDA NSSLGGWESV GTLPKSESCT SQCLEQTDHN GGSFGLVSDK LDEIESCVIY EPWMGQSQII PSNPNYTPFC KDEAFFFPQD SNQPKECPNL
201: GIHDGSELCE GFNVDNLQLN FESADEIFGC SQDATRYHLE DGGMDCLLMD KNISVTESNS LIESALEASS SIQQDCVAFQ SSRAGGSASV MQVINSNTNS
301: ALMNPSCTRN ISLGFPQGVH SKMPLQFPNI VGENNSTEYQ DCRFSQVFLP GESPWESNLE GTCPQARDKA KMRYNEKKKT RMFGKQIRYA SRKARADTRK
401: RVKGRFVKAG EAYDYDPLGT RDI

Best Arabidopsis Sequence Match ( AT3G21880.1 )
(BLAST)

001: MEPKCDHCAT SQALIYCKSD LAKLCLNCDV HVHSANPLSH RHIRSLICEK CFSQPAAIRC LDEKVSYCQG CHWHESNCSE LGHRVQSLNP FSGCPSPTDF
101: NRMWSSILEP PVSGLLSPFV GSFPLNDLNN TMFDTAYSMV PHNISYTQNF SDNLSFFSTE SKGYPDMVLK LEEGEEDLCE GLNLDDAPLN FDVGDDIIGC
201: SSEVHIEPDH TVPNCLLIDK TNTSSFTGSN FTVDKALEAS PPGQQMNINT GLQLPLSPVL FGQIHPSLNI TGENNAADYQ DCGMSPGFIM SEAPWETNFE
301: VSCPQARNEA KLRYKEKKLK RSFGKQIRYA SRKARADTRK RVKGRFVKAG DSYDYDPSSP TTNN

Arabidopsis Description

B-box type zinc finger protein with CCT domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LPX4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.