CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26833	Soybean	nucleus	93.38	93.38
VIT_12s0059g02500.t01	Wine grape	nucleus	55.32	53.92
Solyc05g046040.1.1	Tomato	nucleus	48.7	49.16
PGSC0003DMT400003198	Potato	nucleus	47.99	48.1
AT4G15250.1	Thale cress	nucleus	37.35	47.88
CDY64255	Canola	nucleus	40.9	46.63
AT3G21880.2	Thale cress	nucleus	39.48	45.38
Bra023858.1-P	Field mustard	nucleus	41.37	45.34
CDY55657	Canola	nucleus	41.37	45.34
KRG89998	Soybean	nucleus	37.59	38.88
KRH17709	Soybean	nucleus	37.59	38.88
KRH72628	Soybean	nucleus	36.88	38.52
KRH16989	Soybean	nucleus	37.12	38.2
VIT_19s0014g05120.t01	Wine grape	nucleus	29.08	32.8
KRH52295	Soybean	nucleus, plastid	18.2	24.84
KRH61628	Soybean	nucleus, plastid	17.73	24.27
KRH68113	Soybean	nucleus	19.62	23.78
KRG96381	Soybean	nucleus	19.62	23.65
KRG94656	Soybean	nucleus	21.28	23.38
KRH06865	Soybean	nucleus	20.8	23.1
KRH31920	Soybean	nucleus	18.44	22.41
KRH71535	Soybean	nucleus	17.97	22.35
KRH18980	Soybean	nucleus	18.91	21.92
KRH18308	Soybean	nucleus	18.68	21.88
KRG93763	Soybean	nucleus	18.68	21.58
KRH01455	Soybean	nucleus	17.73	21.31
KRH02915	Soybean	nucleus	18.44	20.86
KRH45169	Soybean	nucleus	17.02	20.69
KRG90917	Soybean	nucleus	21.04	20.32
KRH35868	Soybean	nucleus	20.8	20.09

Protein Annotations

EntrezGene:100804738	MapMan:15.5.1.2	EMBL:ACUP02008417	InterPro:CCT_domain	EnsemblPlantsGene:GLYMA_13G306400	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402	UniProt:K7M2U8	ProteinID:KRH22523.1	EnsemblPlants:KRH22524
ProteinID:KRH22524	ProteinID:KRH22524.1	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31717
PANTHER:PTHR31717:SF27	SMART:SM00336	UniParc:UPI0001D7D147	InterPro:Znf_B-box	SEG:seg	:

Description

hypothetical protein

Coordinates

chr13:-:40256984..40261589

Molecular Weight (calculated)

47131.4 Da

IEP (calculated)

6.231

GRAVY (calculated)

-0.498

Length

423 amino acids

Sequence
(BLAST)

001: MDPLCEFCRV VRAVVYCKSD SARLCLHCDG CVHSANSLSR RHSRSLLCDK CNSQPAMIRC MNHKLSLCQG CDWNPNDCSA LGHRRLALNC YTGCPSLAEF
101: SRLWSFVFDA NSSLGGWESV GTLPKSESCT SQCLEQTDHN GGYFGLVSDK LDEIESCVRY QPRMDQSQII PSNPNYTPYC KDEAFFFPQD SNQPKLQECP
201: NLGIHDGNEL CEGFNVDNVQ LNFEIADEIF YCSQVATRYH LEDGGMDCLL MDKNIAVTES SSLIESAMEA SSSIQQDCVA FQSSRAGGSA SVMQVINSNT
301: NCALMNPSCT KNISLGFPQG LVHSNMPLQF PNIVGENNST EYQDCGLSRV GESPWESNLE GTCPQARDKA KMRYNEKKKT RTFGKQIRYA SRKARADTRK
401: RVKGRFVKAG EAYDYDPLGT RDI

Best Arabidopsis Sequence Match ( AT3G07650.3 )
(BLAST)

001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC VEERVSLCQN CDWSGHNNSN NNNSSSSSTS PQQHKRQTIS
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY

Arabidopsis Description

COL9AT3G07650 protein [Source:UniProtKB/TrEMBL;Acc:A1A6H1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.