Factsheet for VIT_19s0014g05120.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26833	Soybean	nucleus	33.6	29.79
KRH22524	Soybean	nucleus	32.8	29.08
AT4G15250.1	Thale cress	nucleus	25.33	28.79
VIT_12s0059g02500.t01	Wine grape	nucleus	32.0	27.65
PGSC0003DMT400003198	Potato	nucleus	29.33	26.07
Solyc05g046040.1.1	Tomato	nucleus	28.8	25.78
VIT_00s0194g00070.t01	Wine grape	nucleus	27.2	24.64
AT3G21880.2	Thale cress	nucleus	24.0	24.46
CDY64255	Canola	nucleus	23.73	23.99
VIT_12s0057g01350.t01	Wine grape	nucleus	26.13	23.61
CDY55657	Canola	nucleus	24.0	23.32
Bra023858.1-P	Field mustard	nucleus	24.0	23.32
VIT_07s0104g01360.t01	Wine grape	nucleus	19.2	18.27
VIT_01s0011g04240.t01	Wine grape	nucleus	17.33	18.21
VIT_14s0068g01380.t01	Wine grape	nucleus	20.53	17.15
VIT_01s0146g00360.t01	Wine grape	nucleus	20.53	16.42
VIT_11s0052g01800.t01	Wine grape	nucleus, plastid	15.2	15.79
VIT_14s0083g00640.t01	Wine grape	nucleus	16.0	15.35
VIT_04s0008g07340.t01	Wine grape	nucleus, plastid	13.33	14.41

Protein Annotations

EntrezGene:100258828	wikigene:100258828	MapMan:15.5.1.2	ProteinID:CBI20501	ProteinID:CBI20501.3	UniProt:E0CT52
EMBL:FN595229	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0008270	InterPro:IPR000315	EntrezGene:LOC100258828	wikigene:LOC100258828	PFscan:PS50119	PANTHER:PTHR31717
PANTHER:PTHR31717:SF27	SMART:SM00336	UniParc:UPI0001BE1946	ArrayExpress:VIT_19s0014g05120	EnsemblPlantsGene:VIT_19s0014g05120	EnsemblPlants:VIT_19s0014g05120.t01
unigene:Vvi.19265	RefSeq:XP_002280031	RefSeq:XP_002280031.2	InterPro:Znf_B-box	SEG:seg	:

Description

No Description!

Coordinates

chr19:-:5407393..5410337

Molecular Weight (calculated)

41884.3 Da

IEP (calculated)

5.104

GRAVY (calculated)

-0.367

Length

375 amino acids

Sequence
(BLAST)

001: MDKEIVVYCH SWTKEPRPDF WLFEVGFLRG VWLMGSVEPV CEFCGVARAV VYCKQDMAAL CLQCDGFVHS ANFISQRHVR SLLCDKCNSQ PATIQCLEDE
101: ACLCESCECN VNSCLGSEHK HQPLSFYSGS PSPEEFIEIW SSSPSCKSPV SLSTNCINSY WENRNNSRSL FWSVTSLTNR MKELETFTKM SSSPMSPPQA
201: LFFSSVPQLL KQDPSESQNL HICNVNNPCE GRMDDAELNL EKSDKVYGSL QCYINSFEDI GMSCPYMDKS LPADESNIKA VNDQEPINPC RSQSVNLNFP
301: TGLVQSGASL SLSNITGESC VADYQDCGLS AVILNGNPTW DANLGTSCSQ ARVEAKKRYN KKKKTRMYVC NSTHY

Best Arabidopsis Sequence Match ( AT3G21880.2 )
(BLAST)

001: MSPSMEPKCD HCATSQALIY CKSDLAKLCL NCDVHVHSAN PLSHRHIRSL ICEKCFSQPA AIRCLDEKVS YCQGCHWHES NCSELGHRVQ SLNPFSGCPS
101: PTDFNRMWSS ILEPPVSGLL SPFVGSFPLN DLNNTMFDTA YSMVPHNISY TQNFSDNLSF FSTESKGYPD MVLKLEEGEE DLCEGLNLDD APLNFDVGDD
201: IIGCSSEVHI EPDHTVPNCL LIDKTNTSSF TGSNFTVDKA LEASPPGQQM NINTGLQLPL SPVLFGQIHP SLNITGENNA ADYQDCGMSP GFIMSEAPWE
301: TNFEVSCPQA RNEAKLRYKE KKLKRSFGKQ IRYASRKARA DTRKRVKGRF VKAGDSYDYD PSSPTTNN

Arabidopsis Description

B-box type zinc finger protein with CCT domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LPX4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.