Factsheet for VIT_12s0057g01350.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g01920.t01
VIT_02s0012g01930.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48250.1	VIT_02s0012g01920.t01	AT1G32230.1	19548978
AT5G48250.1	VIT_02s0012g01930.t01	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17709	Soybean	nucleus	68.92	69.93
KRG89998	Soybean	nucleus	68.43	69.44
KRH72628	Soybean	nucleus	66.75	68.4
KRH16989	Soybean	nucleus	67.47	68.13
VIT_00s0194g00070.t01	Wine grape	nucleus	65.06	65.22
AT3G07650.1	Thale cress	nucleus	57.11	63.71
CDY35952	Canola	nucleus	56.14	63.14
Bra001264.1-P	Field mustard	nucleus	53.25	62.96
CDX85321	Canola	nucleus	53.98	62.4
CDY07979	Canola	nucleus	52.77	62.22
CDY28029	Canola	nucleus	55.42	61.83
AT5G48250.1	Thale cress	nucleus	54.94	61.13
CDY48743	Canola	nucleus	51.33	60.86
PGSC0003DMT400013624	Potato	nucleus	60.48	60.77
CDY22125	Canola	nucleus	53.49	60.66
Bra040020.1-P	Field mustard	nucleus	53.49	60.66
Solyc05g020020.2.1	Tomato	nucleus	59.76	60.49
Bra029666.1-P	Field mustard	nucleus	56.14	60.36
CDX86318	Canola	nucleus	52.05	60.34
CDY05691	Canola	nucleus	50.36	60.23
Bra020709.1-P	Field mustard	nucleus	50.84	60.11
GSMUA_Achr3P04260_001	Banana	nucleus	60.0	59.29
Bra037499.1-P	Field mustard	nucleus	49.16	59.13
PGSC0003DMT400044878	Potato	nucleus	58.31	58.88
PGSC0003DMT400074143	Potato	nucleus	57.83	58.82
GSMUA_Achr9P12860_001	Banana	nucleus	59.04	58.75
Os06t0298200-01	Rice	nucleus	57.59	58.58
Solyc07g045180.2.1	Tomato	nucleus	58.55	58.13
GSMUA_Achr7P20150_001	Banana	nucleus	57.11	57.52
CDX74034	Canola	nucleus	53.49	56.92
Os02t0724000-01	Rice	nucleus	55.66	56.76
HORVU6Hr1G071950.2	Barley	nucleus	51.81	56.28
KXG19836	Sorghum	nucleus	55.66	56.2
GSMUA_Achr5P04270_001	Banana	nucleus	57.11	56.16
GSMUA_Achr10P...	Banana	nucleus	53.98	55.86
TraesCS6B01G315400.1	Wheat	nucleus	52.29	55.64
TraesCS7A01G218600.1	Wheat	nucleus	53.01	55.56
TraesCS7D01G220300.1	Wheat	nucleus	53.01	55.56
TraesCS6A01G286400.3	Wheat	nucleus	51.81	55.13
TraesCS6D01G267100.1	Wheat	nucleus	51.81	54.85
EES07342	Sorghum	nucleus	52.53	53.69
GSMUA_Achr5P22460_001	Banana	nucleus	50.36	53.45
Zm00001d051684_P007	Maize	nucleus	52.05	53.2
Zm00001d045804_P003	Maize	nucleus	55.66	52.98
TraesCS7B01G125500.1	Wheat	cytosol, nucleus, plastid	42.41	52.23
Solyc12g006240.1.1	Tomato	nucleus	33.49	51.67
Zm00001d017885_P001	Maize	nucleus	46.75	42.08
VIT_12s0059g02500.t01	Wine grape	nucleus	41.2	39.4
VIT_19s0014g05120.t01	Wine grape	nucleus	23.61	26.13
VIT_01s0011g04240.t01	Wine grape	nucleus	20.96	24.37
VIT_04s0008g07340.t01	Wine grape	nucleus, plastid	20.24	24.21
VIT_11s0052g01800.t01	Wine grape	nucleus, plastid	19.76	22.71
VIT_01s0146g00360.t01	Wine grape	nucleus	25.3	22.39
VIT_14s0068g01380.t01	Wine grape	nucleus	23.61	21.83
VIT_07s0104g01360.t01	Wine grape	nucleus	20.48	21.57
VIT_14s0083g00640.t01	Wine grape	nucleus	20.24	21.48

Protein Annotations

EntrezGene:100254423	wikigene:100254423	MapMan:15.5.1.2	EMBL:AM424120	ProteinID:CAN82066	ProteinID:CAN82066.1
ProteinID:CBI28476	ProteinID:CBI28476.3	InterPro:CCT_domain	UniProt:D7TDA3	EMBL:FN595759	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402	EMBL:KX986751	EntrezGene:LOC100254423	wikigene:LOC100254423
PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31717	PANTHER:PTHR31717:SF39	SMART:SM00336
UniParc:UPI0001BE3083	ArrayExpress:VIT_12s0057g01350	EnsemblPlantsGene:VIT_12s0057g01350	EnsemblPlants:VIT_12s0057g01350.t01	RefSeq:XP_002264506	RefSeq:XP_002264506.2
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

CONSTANS-like protein 9b [Source:UniProtKB/TrEMBL;Acc:D7TDA3]

Coordinates

chr12:-:10077593..10083126

Molecular Weight (calculated)

44985.1 Da

IEP (calculated)

4.762

GRAVY (calculated)

-0.490

Length

415 amino acids

Sequence
(BLAST)

001: MGYICDFCGE QRSIVYCRSD AASLCLSCDR HVHSANALSR RHSRTLLCER CNSQPAFVRC IEEKISLCQN CDWTGHGGST TTSSHKKETI NCYSGCPSSE
101: GLSTMWPFVL DLPSTGNSTC EQGLSLMCLN ETSEMNSWGP PGNSSRQDAS LTVEVNDANN VDKSSILIGS SSVPELNSPS QKLDQPSGSA DLTLPKLLCP
201: GTDDLGFCED DSLYEDFNMD EVDLNLENYE ELFGVALSHS EQLFENGGID SLFGKMDTSG ADSHCQGAVI AEGSVGLANA VQPTYSNAAS ADSIMSSKTE
301: PILCFTGKQA HSSLSFSGLT GESSAGDYQD CGASPTFLMG EPPWCPPGPE SSLPSTSRSS AVMRYREKKK NRKFDKRVRY ASRKARADVR QRVKGRFVKA
401: GEAYDYDPIS ETRSF

Best Arabidopsis Sequence Match ( AT3G07650.3 )
(BLAST)

001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC VEERVSLCQN CDWSGHNNSN NNNSSSSSTS PQQHKRQTIS
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY

Arabidopsis Description

COL9AT3G07650 protein [Source:UniProtKB/TrEMBL;Acc:A1A6H1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.