Factsheet for VIT_02s0012g01930.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0194g00070.t01
VIT_01s0011g06550.t01
VIT_03s0038g02420.t01
VIT_05s0102g00750.t01
VIT_07s0205g00170.t01
VIT_08s0007g00410.t01
VIT_08s0007g03990.t01
VIT_08s0007g07640.t01
VIT_12s0057g01350.t01
VIT_15s0021g02690.t01
VIT_17s0000g00270.t01
VIT_17s0000g06920.t01
VIT_17s0000g07580.t01
VIT_19s0014g05100.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32230.1	VIT_05s0102g00750.t01	AT1G06040.1	11018516
AT1G32230.1	VIT_05s0102g00750.t01	AT1G06040.1	19548978
AT1G32230.1	VIT_17s0000g07580.t01	AT1G74890.1	19548978
AT1G32230.1	VIT_01s0011g06550.t01	AT2G01980.1	17023541
AT1G32230.1	VIT_03s0038g02420.t01	AT2G16770.1	19548978
AT1G32230.1	VIT_07s0205g00170.t01	AT2G22760.1	19548978
AT1G32230.1	VIT_17s0000g00270.t01	AT2G33550.1	19548978
AT1G32230.1	VIT_08s0007g00410.t01	AT2G37630.1	19548978
AT1G32230.1	VIT_08s0007g07640.t01	AT3G04060.1	19548978
AT1G32230.1	VIT_08s0007g07640.t01	AT3G04060.1	25348421
AT1G32230.1	VIT_15s0021g02690.t01	AT4G00050.1	19548978
AT1G32230.1	VIT_08s0007g03990.t01	AT5G03760.1	19548978
AT1G32230.1	VIT_00s0194g00070.t01	AT5G48250.1	19548978
AT1G32230.1	VIT_12s0057g01350.t01	AT5G48250.1	19548978
AT1G32230.1	VIT_19s0014g05100.t01	AT5G54680.1	19548978
AT1G32230.1	VIT_17s0000g06920.t01	AT5G61270.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0012g01920.t01	Wine grape	cytosol	53.93	63.04
Solyc08g005270.2.1	Tomato	nucleus	43.18	44.83
KRH74370	Soybean	mitochondrion, nucleus, plastid	40.93	43.74
Bra023252.1-P	Field mustard	nucleus	33.55	43.36
CDY60257	Canola	cytosol	22.63	43.12
KRH39574	Soybean	mitochondrion, nucleus, plastid	39.65	42.37
CDY22597	Canola	nucleus	36.92	42.28
CDY67026	Canola	nucleus	36.92	41.82
PGSC0003DMT400038368	Potato	nucleus	38.04	40.24
PGSC0003DMT400043197	Potato	nucleus	38.04	39.9
Bra035511.1-P	Field mustard	cytosol	35.15	39.25
AT1G32230.1	Thale cress	nucleus	37.08	39.22
CDY32124	Canola	nucleus	32.58	38.3
Bra017317.1-P	Field mustard	nucleus	32.58	38.3
GSMUA_Achr11P...	Banana	nucleus	31.3	37.5
CDY43007	Canola	nucleus	34.83	37.35
AT2G35510.3	Thale cress	cytosol	34.03	37.32
GSMUA_Achr8P14660_001	Banana	cytosol, endoplasmic reticulum, nucleus	32.26	36.55
GSMUA_Achr2P18060_001	Banana	nucleus	33.71	36.52
Bra005336.1-P	Field mustard	cytosol, nucleus, plastid	30.66	36.45
GSMUA_Achr5P14120_001	Banana	nucleus	33.07	36.4
CDY41739	Canola	cytosol	32.1	36.36
CDX84199	Canola	cytosol, nucleus, plastid	28.41	35.9
CDY31694	Canola	nucleus	30.18	35.61
Os10t0577800-01	Rice	nucleus	33.71	35.53
TraesCS1B01G210300.4	Wheat	peroxisome	32.91	34.8
TraesCS1A01G195400.4	Wheat	cytosol	33.07	34.8
TraesCS1D01G199200.1	Wheat	cytosol, nucleus, plastid	33.07	34.8
GSMUA_Achr4P19000_001	Banana	nucleus	22.95	34.13
TraesCS5B01G557500.2	Wheat	nucleus	31.3	33.74
HORVU1Hr1G050960.7	Barley	nucleus	32.74	33.5
TraesCS5D01G551800.3	Wheat	nucleus	30.82	33.22
KRH74373	Soybean	mitochondrion	25.2	32.91
TraesCS4A01G321300.1	Wheat	nucleus	29.86	32.69
HORVU5Hr1G124010.1	Barley	nucleus	30.34	32.64
VIT_01s0127g00680.t01	Wine grape	nucleus	17.01	32.62
KXG38822	Sorghum	nucleus	31.14	32.6
Zm00001d030110_P001	Maize	mitochondrion, nucleus	30.82	32.21
Os03t0854800-03	Rice	nucleus	29.53	31.51
Zm00001d014423_P002	Maize	nucleus	30.66	31.16
EER90487	Sorghum	nucleus	27.45	29.84
VIT_17s0000g08370.t01	Wine grape	nucleus	16.21	29.36
HORVU0Hr1G014460.1	Barley	nucleus	25.84	27.9
Zm00001d012821_P003	Maize	extracellular, vacuole	27.61	26.22
VIT_18s0001g08290.t01	Wine grape	plastid	19.26	24.74

Protein Annotations

EntrezGene:100260925	wikigene:100260925	Gene3D:3.90.228.10	MapMan:35.1	EMBL:AM470530	ProteinID:CAN61759
ProteinID:CAN61759.1	ProteinID:CCB57867	ProteinID:CCB57867.1	UniProt:F6HT57	EMBL:FN596247	GO:GO:0003674
GO:GO:0003824	GO:GO:0003950	GO:GO:0016740	InterPro:IPR012317	EntrezGene:LOC100260925	wikigene:LOC100260925
PFAM:PF12174	PFscan:PS51059	PANTHER:PTHR32263	PANTHER:PTHR32263:SF4	InterPro:Poly(ADP-ribose)pol_cat_dom	InterPro:RST
SUPFAM:SSF56399	TIGR:TC53609	UniParc:UPI000210994D	ArrayExpress:VIT_02s0012g01930	EnsemblPlantsGene:VIT_02s0012g01930	EnsemblPlants:VIT_02s0012g01930.t01
unigene:Vvi.4001	RefSeq:XP_002276953	RefSeq:XP_002276953.2	:	:	:

Description

No Description!

Coordinates

chr2:+:8466566..8483363

Molecular Weight (calculated)

70016.1 Da

IEP (calculated)

7.817

GRAVY (calculated)

-0.379

Length

623 amino acids

Sequence
(BLAST)

001: MACIMVGENM NMYRMAADCI TSVEMETKLE KVLDSKSRIV VGWKRKRAAQ YAAHLSALNS KKNRLCKRRK LDGYRMNYGP NFEKSLLKGY SNFMKTELPQ
101: RIMFYVNGDW KDFPQNIITL VRKDFQVRKS YTEVELNGNC FMLDFMHMVR VDMKTGLQQP IAWIDEAGNC FIPETFSGED EIHYCCRHEY GKDQQLFFGE
201: PYGSHDIKLQ LEIDIKGVGH SKLEECSGES NALDKHFLIG KKPASNRFDV EVEDSNKMSD VKVDEAVGEN QQIEGNLISR IGSSHGSLDF DTVRDMFTSG
301: MNSLISADII EVYRGSSASM EARLELFQKQ IEITSKYRAD ANVKYAWLAA SKEALSSIMM YGLGHCRPSK VKPVYGIGVH LTAANFSYPS VNYCDVDENG
401: VQHIVLCRVI MGNMELVHPG SGQCHPSSEN FDSGVDDLQN PKHYIIWNMN MNTHIYPEYV VSFKVSSRVG AEGYLIGNES NYDISGVTTC QGQSQGHSKL
501: GLHPVGLGND SHPTPSLGRS LGKATTLGSS TLRVPKSPWM PFPMLFAAIS KKVPLKDMQL VDTQYELFRR KKISRADFVK KLRLIVGDTL LKSTITHLQC
601: KVPSKTSCDL EAPKQELESS GSL

Best Arabidopsis Sequence Match ( AT1G32230.3 )
(BLAST)

001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNGARGSG SANSVGSSTT
501: RPKSPWMPFP TLFAAISHKV AENDMLLINA DYQQLRDKKM TRAEFVRKLR VIVGDDLLRS TITTLQNQVR

Arabidopsis Description

RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.