Factsheet for VIT_08s0007g03990.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

cytosol 2
peroxisome 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, peroxisome, secretory
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g01920.t01
VIT_02s0012g01930.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03760.1	VIT_02s0012g01920.t01	AT1G32230.1	19548978
AT5G03760.1	VIT_02s0012g01930.t01	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0074g00500.t01	Wine grape	plasma membrane	72.78	87.53
Solyc09g009010.2.1	Tomato	cytosol, peroxisome, plasma membrane	46.85	84.62
Solyc10g083670.1.1	Tomato	plasma membrane	83.33	84.43
PGSC0003DMT400072644	Potato	plasma membrane	83.15	84.24
GSMUA_Achr10P...	Banana	plasma membrane	82.04	84.22
KRH67832	Soybean	plasma membrane	82.78	83.86
KRG96119	Soybean	plasma membrane	82.78	83.86
GSMUA_Achr2P20260_001	Banana	plasma membrane	81.11	82.18
PGSC0003DMT400007050	Potato	mitochondrion	80.93	81.99
CDY11268	Canola	plasma membrane	80.37	81.58
CDY10358	Canola	plasma membrane	80.37	81.58
CDX70286	Canola	plasma membrane	80.37	81.58
Bra009512.1-P	Field mustard	plasma membrane	80.37	81.58
GSMUA_Achr6P13400_001	Banana	plasma membrane	81.85	81.55
Bra005779.1-P	Field mustard	plasma membrane	80.19	81.39
GSMUA_Achr10P...	Banana	plasma membrane	80.0	81.05
AT5G03760.1	Thale cress	plasma membrane	79.44	80.49
KRH32645	Soybean	plasma membrane	74.26	78.47
KRH20021	Soybean	plasma membrane	74.26	78.47
VIT_06s0061g01230.t01	Wine grape	plasma membrane	74.07	75.05
VIT_08s0040g01340.t01	Wine grape	extracellular, plasma membrane	62.78	70.62
GSMUA_Achr5P15920_001	Banana	plasma membrane	76.85	69.17
CDX80885	Canola	plasma membrane	67.22	69.14
VIT_14s0066g01730.t01	Wine grape	plasma membrane	42.78	34.79
VIT_09s0018g01950.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	43.89	34.2
VIT_18s0001g08580.t01	Wine grape	cytosol, peroxisome, plasma membrane	43.15	33.33
VIT_04s0069g00780.t01	Wine grape	plasma membrane	42.41	33.0
VIT_00s0580g00010.t01	Wine grape	plasma membrane, plastid	42.04	30.15

Protein Annotations

EntrezGene:100259738	wikigene:100259738	MapMan:21.2.3.1.1.1	Gene3D:3.90.550.10	ProteinID:CBI30236	ProteinID:CBI30236.3
UniProt:D7TJ10	EMBL:FN595991	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR029044
EntrezGene:LOC100259738	wikigene:LOC100259738	InterPro:Nucleotide-diphossugar_trans	PFAM:PF13641	PANTHER:PTHR32044	PANTHER:PTHR32044:SF10
SUPFAM:SSF53448	TMHMM:TMhelix	UniParc:UPI0001BE388B	ArrayExpress:VIT_08s0007g03990	EnsemblPlantsGene:VIT_08s0007g03990	EnsemblPlants:VIT_08s0007g03990.t01
unigene:Vvi.12596	unigene:Vvi.17515	RefSeq:XP_002283672	RefSeq:XP_002283672.1	SEG:seg	:

Description

No Description!

Coordinates

chr8:-:17999545..18003884

Molecular Weight (calculated)

61721.7 Da

IEP (calculated)

9.143

GRAVY (calculated)

0.136

Length

540 amino acids

Sequence
(BLAST)

001: MDRLSSTTLL PDALQGTRDD ISEQLGVVWS QIKAPVIVPL MSIAVAVCLA MSLMLFFERV YLSIVIVLVK LFGRKPDKRY KWEPMKDDVE LGNSAYPMVL
101: VQIPMYNEKE VYQLSIGAAC GLSWPSDRII IQVLDDSTDP TIKDLVELEC QRWASKGINI KYEIRNNRNG YKAGALKEGM KHSYVKECDY VAIFDADFQP
201: EPDFLWRTVP FLVHNPEIAL VQARWKFVNS DECLMTRMQE MSLDYHFTVE QEVGSSTYAF FGFNGTAGVW RIAALNEAGG WKDRTTVEDM DLAVRASLKG
301: WKFVYLGTLK VKNELPSTFK AYRYQQHRWS CGPANLFRKM VMEIVRNKKV SLWKKVHVIY SFFIVRKLVA HIVTFVFYCV VLPATVLVPD VEVPRWGAVY
401: IPTIITILNA VGTPRSLHLM VFWILFENVM SLHRTKATFI GLLEGGRVNE WVVTEKLGDA LKVKAATKAP KKPRFKIGER LHLLELGVGA FLFFCGCYDV
501: AFGRNHYFIY LYVQAIAFFI VGFGYVATLS HNFYIPSCKK

Best Arabidopsis Sequence Match ( AT5G03760.1 )
(BLAST)

001: MELGDTTSVI PDSFMGYRDD ITMQMSMVLD QIRAPLIVPA LRLGVYICLT MSVMLFVERV YMGIVISLVK LFGRKPDKRF KYEPIKDDIE LGNSAYPMVL
101: IQIPMFNERE VYQLSIGAAC GLSWPSDRIV IQVLDDSTDP TIKDLVEMEC SRWASKGVNI KYEIRDNRNG YKAGALKEGM KKSYVKSCDY VAIFDADFQP
201: EADFLWRTVP YLLHNPKLAL VQARWKFVNS DECLMTRMQE MSLDYHFTVE QEVGSSTYAF FGFNGTAGIW RISALNEAGG WKDRTTVEDM DLAVRASLKG
301: WKFLYLGSLK VKNELPSTFK AYRYQQHRWS CGPANLFRKM AFEIMTNKNV TLWKKVHVIY SFFVVRKLVA HIVTFIFYCV ILPATVLVPE VTVPKWGAVY
401: IPSVITLLNA VGTPRSLHLM VFWILFENVM SLHRTKATFI GLLEGGRVNE WIVTEKLGDV KAKSATKTSK KVIRFRFGDR IHVLELGVGM YLLFVGCYDA
501: FFGKNHYYLY LFAQAIAFFI AGFGQIGTIV PNH

Arabidopsis Description

CSLA9RAT4 [Source:UniProtKB/TrEMBL;Acc:A0A178UH35]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.