Factsheet for VIT_09s0018g01950.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane, peroxisome

Predictor Summary:

cytosol 1
endoplasmic reticulum 1
plasma membrane 2
golgi 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0080g00970.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G31590.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0069g00780.t01	Wine grape	plasma membrane	84.42	84.29
KRH61950	Soybean	plasma membrane	82.83	82.83
KRH52609	Soybean	plasma membrane	82.83	82.83
CDX72314	Canola	plasma membrane	79.51	80.56
AT4G31590.1	Thale cress	plasma membrane	79.8	79.91
CDY13445	Canola	plasma membrane	79.22	79.91
Bra023993.1-P	Field mustard	plasma membrane	76.48	79.7
CDX76802	Canola	plasma membrane	74.17	77.88
Solyc08g006310.2.1	Tomato	golgi, peroxisome, plasma membrane	77.92	77.81
KRH16165	Soybean	plasma membrane	77.78	77.78
Bra007838.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	73.88	77.58
PGSC0003DMT400024646	Potato	golgi, peroxisome, plasma membrane	77.49	77.38
CDY34762	Canola	endoplasmic reticulum, peroxisome, plasma membrane	76.33	77.34
KRH04930	Soybean	plasma membrane	77.2	77.2
AT2G24630.1	Thale cress	endoplasmic reticulum, peroxisome, plasma membrane	76.77	77.1
Os08t0253800-01	Rice	cytosol, peroxisome, plasma membrane	53.25	77.04
VIT_14s0066g01730.t01	Wine grape	plasma membrane	69.7	72.74
CDX68766	Canola	plasma membrane	79.94	71.48
CDY57881	Canola	extracellular	12.55	69.6
HORVU3Hr1G000340.2	Barley	plasma membrane	62.34	66.87
VIT_18s0001g08580.t01	Wine grape	cytosol, peroxisome, plasma membrane	66.38	65.81
TraesCS3B01G000600.1	Wheat	cytosol, peroxisome, plasma membrane	70.85	65.38
TraesCSU01G038900.1	Wheat	cytosol, peroxisome, plasma membrane	70.71	65.33
Zm00001d024178_P002	Maize	cytosol, peroxisome, plasma membrane	71.14	65.13
Zm00001d049336_P001	Maize	plasma membrane	71.57	64.92
KXG24822	Sorghum	peroxisome	71.14	64.87
TraesCS3D01G010500.1	Wheat	cytosol, peroxisome, plasma membrane	70.71	64.64
CDY60854	Canola	plasma membrane	80.09	63.43
KRH57821	Soybean	plasma membrane	21.5	61.83
VIT_00s0580g00010.t01	Wine grape	plasma membrane, plastid	62.63	57.64
Bra011284.1-P	Field mustard	plasma membrane	79.8	56.95
VIT_13s0074g00500.t01	Wine grape	plasma membrane	30.88	47.66
VIT_08s0040g01340.t01	Wine grape	extracellular, plasma membrane	31.02	44.79
VIT_08s0007g03990.t01	Wine grape	cytosol, peroxisome, plasma membrane	34.2	43.89
VIT_06s0061g01230.t01	Wine grape	plasma membrane	33.48	43.53

Protein Annotations

EntrezGene:100265643	wikigene:100265643	MapMan:21.2.1.1.1	Gene3D:3.90.550.10	ProteinID:CCB49735	ProteinID:CCB49735.1
UniProt:F6HBU7	EMBL:FN595513	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:Glyco_trans_2-like
InterPro:IPR029044	EntrezGene:LOC100265643	wikigene:LOC100265643	InterPro:Nucleotide-diphossugar_trans	PFAM:PF13632	PANTHER:PTHR32044
PANTHER:PTHR32044:SF7	SUPFAM:SSF53448	TMHMM:TMhelix	UniParc:UPI0002109AF6	ArrayExpress:VIT_09s0018g01950	EnsemblPlantsGene:VIT_09s0018g01950
EnsemblPlants:VIT_09s0018g01950.t01	RefSeq:XP_002274399	RefSeq:XP_002274399.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr9:+:19558384..19561458

Molecular Weight (calculated)

79502.1 Da

IEP (calculated)

8.393

GRAVY (calculated)

0.077

Length

693 amino acids

Sequence
(BLAST)

001: MAPSIDFSRL WGKDSSRKGT PVVVTMENPN YSVLEIDGPD AAFRPVDKDR GKNAKQFTWV LLLKAHRAVG CLSWLGNALW ILLGAIKKRL IFGQGVTMEN
101: EKSGRGRLLF RTILAFLLMS LAFLAFEVFA HFNGWHYFHN HGLHIPQTLE IKGWLHAIYV AWLEFRADYI APSIQVLSSF CVALFLIQSA DRMLLCLGCF
201: WIKYKKIKPR IEGDPFKSDD LEGLGYDYPM VLVQIPMCNE REVYEQSISA VCQLDWPKDR LLIQVLDDSD DESIQWLIKG EVSKWSQKGI NIIYRHRLVR
301: TGYKAGNLKS AMNCDYVKAY EFVAIFDADF QPNPDFLMQT VPHFKDNPEL GLVQARWAFV NKDENLLTRL QNINLCFHFE VEQQVNGVFI NFFGFNGTAG
401: VWRIKTLEDS GGWLERTTVE DMDIAVRAHL NGWKFIFLND VKVLCEVPES YEAYRKQQHR WHSGPMHLFR LCLPAIITSK VAVWKKANLI LLFFLLRKLI
501: LPFYSFTLFC IILPLTMFVP EAELPVWVIC YVPVFMSFLN ILPAPRSFPF IVPYLLFENT MSVTKFNAMV SGLFQLGSSY EWVVTKKAGR ASEPDLLAAA
601: ERETKAMNHP QLYRGSSDSE LSELNKLKEH QETAPKPKKT NKLYRKELAL AFLLLTAAVR SLLSAQGVHF YFLLFQGVSF LLVGLDLIGE QMS

Best Arabidopsis Sequence Match ( AT4G31590.1 )
(BLAST)

001: MAPRLDFSDW WAKDTRKGTP VVVKMENPNY SVVEIDGPDS AFRPVEKSRG KNAKQVTWVL LLKAHRAVGC LTWLATVFWS LLGAIKKRLS FTHPLGSEKL
101: GRDRWLFTAI KLFLAVSLVI LGFEIVAYFR GWHYFQSPSL HIPTSTLEIQ SLFHLVYVGW LTLRADYIAP PIKALSKFCI VLFLIQSVDR LVLCLGCFWI
201: KYKKIKPRFD EEPFRNDDAE GSGSEYPMVL VQIPMCNERE VYEQSISAVC QLDWPKDRIL VQVLDDSNDE SIQQLIKAEV AKWSQKGVNI IYRHRLVRTG
301: YKAGNLKSAM SCDYVEAYEY VAIFDADFQP TPDFLKLTVP HFKDNPELGL VQARWTFVNK DENLLTRLQN INLCFHFEVE QQVNGVFLNF FGFNGTAGVW
401: RIKALEESGG WLERTTVEDM DIAVRAHLHG WKFIYLNDVK VLCEVPESYE AYKKQQHRWH SGPMQLFRLC LGSILTSKIA IWKKANLILL FFLLRKLILP
501: FYSFTLFCII LPLTMFVPEA ELPVWVICYI PVFMSFLNLL PSPKSFPFIV PYLLFENTMS VTKFNAMVSG LFQLGSSYEW IVTKKAGRSS ESDLLSITEK
601: ETPTKKSQLL RGVSDSELLE LSQLEEQKQA VSKKPVKKTN KIYHKELALA FLLLTAALRS LLAAQGVHFY FLLFQGVTFL LVGLDLIGEQ MS

Arabidopsis Description

CSLC5CSLC5 [Source:UniProtKB/TrEMBL;Acc:A0A178UYZ0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.