Factsheet for VIT_00s0580g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_09s0002g03770.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07330.1	VIT_09s0002g03770.t01	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400053633	Potato	endoplasmic reticulum, plasma membrane, vacuole	19.79	84.66
Solyc09g057640.2.1	Tomato	cytosol, peroxisome, plasma membrane	73.84	81.05
AT3G07330.1	Thale cress	cytosol, peroxisome, plasma membrane	72.24	79.77
GSMUA_Achr6P27800_001	Banana	plasma membrane	66.8	77.86
KRH07420	Soybean	plasma membrane	71.31	76.93
CDY08003	Canola	cytosol, peroxisome, plasma membrane	70.78	76.69
KRH66156	Soybean	endoplasmic reticulum	71.71	76.38
Bra001246.1-P	Field mustard	cytosol, peroxisome, plasma membrane	70.78	76.25
CDX74051	Canola	cytosol, peroxisome, plasma membrane	70.65	76.11
PGSC0003DMT400095504	Potato	plasma membrane	48.07	72.26
VIT_18s0001g08580.t01	Wine grape	cytosol, peroxisome, plasma membrane	59.63	64.23
VIT_14s0066g01730.t01	Wine grape	plasma membrane	56.44	64.01
VIT_04s0069g00780.t01	Wine grape	plasma membrane	58.57	63.54
VIT_09s0018g01950.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	57.64	62.63
VIT_13s0074g00500.t01	Wine grape	plasma membrane	27.36	45.88
VIT_06s0061g01230.t01	Wine grape	plasma membrane	30.28	42.78
VIT_08s0040g01340.t01	Wine grape	extracellular, plasma membrane	27.22	42.71
VIT_08s0007g03990.t01	Wine grape	cytosol, peroxisome, plasma membrane	30.15	42.04
Zm00001d010955_P001	Maize	extracellular	9.96	40.54

Protein Annotations

EntrezGene:100250441	wikigene:100250441	MapMan:21.2.1.1.1	Gene3D:3.90.550.10	EMBL:AM432588	ProteinID:CAN82493
ProteinID:CAN82493.1	ProteinID:CCB59152	ProteinID:CCB59152.1	UniProt:F6HWT8	EMBL:FN596297	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:IPR029044	EntrezGene:LOC100250441	wikigene:LOC100250441	InterPro:Nucleotide-diphossugar_trans
PFAM:PF13641	PANTHER:PTHR32044	PANTHER:PTHR32044:SF14	SUPFAM:SSF53448	TMHMM:TMhelix	UniParc:UPI000210A1E9
ArrayExpress:VIT_00s0580g00010	EnsemblPlantsGene:VIT_00s0580g00010	EnsemblPlants:VIT_00s0580g00010.t01	unigene:Vvi.20794	RefSeq:XP_003635418	RefSeq:XP_003635418.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:32235167..32244299

Molecular Weight (calculated)

86167.9 Da

IEP (calculated)

9.197

GRAVY (calculated)

0.003

Length

753 amino acids

Sequence
(BLAST)

001: MKTKFGVGFP NKGHPSVHPA TSPQSIPTNS GSQHQSSSEG RKNGAVKEIS KSKHILTVSF FPRFCMSRPQ NYEFQEWWNK QREKHHDLFI DKSETQRLFT
101: SVEIHTPTAD PAVDKERTRS ARQLSWVCLL KLQQLASSIA YLSNGFVAIL RTANRRIASS SVAADSSRSE SRLYHAIKVF LVVVLVLLLF ELVAYFKGWH
201: FSPPSLSSAE VEVLGLVELV YANWLKIRAN YLAPPLQSLT NVCIVLFLIQ SVDRIVLMLG CFWIKFRKLK PVAVMEFSEN SEGQNVQDYP MVLVQIPMCN
301: EREVYQQSIA AVCIQDWPRE RMLVQVLDDS DDLDVQHLIK AEVQKWQQRG LRILYRHRLI RTGYKAGNLK SAMSCDYVKD YEFVAIFDAD FQPGPDFLKK
401: TIPYFKGNDD LALVQTRWAF VNKDENLLTR LQNINLSFHF EVEQQVNGVF INFFGFNGTA GVWRIKALED CGGWLERTTV EDMDVAVRAH LCGWKFIYLN
501: DVKCLCELPE SYEAYKKQQH RWHSGPMQLF RLCFFDILRS KVSSAKKANL ILLFFLLRKL ILPFYSFTLF CIILPLTMFL PEAQLPAWVV CYVPGIMSIL
601: NIVPAPRSFP FIVPYLLFEN TMSVTKFNAM ISGLFRFGSS YEWIVTKKLG RSSEADLVAF AEKESDPLVE GSSLHRSSSD PGILELNKLE MTKKTGKTKR
701: NRLYRKELAL AFILLTASVR SLLSAQGIHF YFLLFQGITF LVVGLDLIGE QVS

Best Arabidopsis Sequence Match ( AT3G07330.1 )
(BLAST)

001: MSRSQNEEFQ QWWNKQRDRN NHDVLYAGDD EAFLTVEIRT PATVDPDKDR IRTRTVRQLS RLYLLKFKQL ASSFLWIGNS FLYLVRTANR RIANDNPPSV
101: SSSARLYRLI KGFLVVVVLL LCFELAAYFK GWHFTPPSVA SAEVAVEVVY AWWLEIRASY LAPPLQSLTN VCIVLFLIQS VDRLVLVLGC FWIKLRRIKP
201: VASMEYPTKL VGEGVRLEDY PMVIVQIPMC NEKEVYQQSI GAVCMLDWPR ERMLVQVLDD SSELDVQQLI KAEVQKWQQR GVRIVYRHRL IRTGYKAGNL
301: KAAMNCEYVK DYEFVAIFDA DFQPPADFLK KTVPHFKGNE ELALVQTRWA FVNKDENLLT RLQNINLSFH FEVEQQVNGV FINFFGFNGT AGVWRIKALE
401: DCGGWLERTT VEDMDIAVRA HLCGWKFIYL NDVKCLCELP ESYEAYKKQQ YRWHSGPMQL FRLCFFDILR SKVSAAKKAN MIFLFFLLRK LILPFYSFTL
501: FCVILPLTMF FPEANLPSWV VCYIPGIMSI LNIIPAPRSF PFIVPYLLFE NTMSVTKFGA MISGLFKFDS SYEWVVTKKL GRSSEADLVA YAESGSLVES
601: TTIQRSSSDS GLTELSKLGA AKKAGKTKRN RLYRTEIALA FILLAASVRS LLSAQGIHFY FLLFQGITFV IVGLDLIGEQ VS

Arabidopsis Description

CSLC6Probable xyloglucan glycosyltransferase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRT3]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.