Factsheet for Solyc09g057640.2.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

plastid 1
cytosol 1
plasma membrane 2
golgi 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g120880.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07330.1	Solyc03g120880.2.1	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400053633	Potato	endoplasmic reticulum, plasma membrane, vacuole	24.78	96.59
PGSC0003DMT400095504	Potato	plasma membrane	62.97	86.23
GSMUA_Achr6P27800_001	Banana	plasma membrane	71.57	76.01
AT3G07330.1	Thale cress	cytosol, peroxisome, plasma membrane	74.05	74.49
VIT_00s0580g00010.t01	Wine grape	plasma membrane, plastid	81.05	73.84
CDY08003	Canola	cytosol, peroxisome, plasma membrane	73.18	72.23
KRH07420	Soybean	plasma membrane	73.47	72.21
Bra001246.1-P	Field mustard	cytosol, peroxisome, plasma membrane	73.47	72.1
CDX74051	Canola	cytosol, peroxisome, plasma membrane	73.32	71.96
KRH66156	Soybean	endoplasmic reticulum	73.62	71.43
Solyc02g089640.2.1	Tomato	plasma membrane	62.24	65.29
Solyc08g006310.2.1	Tomato	golgi, peroxisome, plasma membrane	64.14	63.4
Solyc12g088240.1.1	Tomato	cytosol, peroxisome, plasma membrane	61.66	61.48
Solyc04g077470.2.1	Tomato	plasma membrane	63.56	58.76
Solyc05g055410.1.1	Tomato	plasma membrane	32.51	42.4
Solyc11g007600.1.1	Tomato	plasma membrane	32.51	42.16
Solyc10g083670.1.1	Tomato	plasma membrane	32.65	42.03
Solyc09g009010.2.1	Tomato	cytosol, peroxisome, plasma membrane	18.22	41.81
Zm00001d010955_P001	Maize	extracellular	10.93	40.54
Solyc06g074630.2.1	Tomato	plasma membrane	30.61	39.4
Solyc11g066820.1.1	Tomato	plasma membrane	30.03	39.31

Protein Annotations

MapMan:21.2.1.1.1	Gene3D:3.90.550.10	GO:GO:0000003	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0005802	GO:GO:0008150	GO:GO:0009856
GO:GO:0016020	GO:GO:0016021	GO:GO:0048868	InterPro:IPR029044	UniProt:K4CTF5	InterPro:Nucleotide-diphossugar_trans
PFAM:PF13641	PANTHER:PTHR32044	PANTHER:PTHR32044:SF14	SUPFAM:SSF53448	EnsemblPlantsGene:Solyc09g057640.2	EnsemblPlants:Solyc09g057640.2.1
TMHMM:TMhelix	UniParc:UPI000276B36B	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr9:+:50062534..50076289

Molecular Weight (calculated)

78854.8 Da

IEP (calculated)

8.444

GRAVY (calculated)

0.037

Length

686 amino acids

Sequence
(BLAST)

001: MSRPPNQEFQ EWWNKQRSAN GSEDLFPSSS ENSSFLTVEI SSPTVAEKER TRSARQLSWI CLLKFQQIAN SIAFLTNGFI SIVRTANRRI VTSNSAPPRS
101: DSRLYRVIKV FLTVSVILLV FELVAYFRGW HFSPPTVESA SAEVVDLVEH VYANWLDIRA NYLAPPLQSL INMCILLFLI QSVDRVVLVL GCFWIKFRGL
201: KPLAEIDYSS DVENLNSEDY PMVLLQIPMC NEREVYQQSI AAVCVQDWPK DRMLVQILDD SDDLGVQGLI KAEVQKWQQK GVHIIYRHRL IRTGYKAGNL
301: KSAMSCDYVK NYEFVAIFDA DFQPTPDFLK NTVPYFKGHD DVALVQTRWA FVNKDENLLT RLQNINLAFH FEVEQQVNGW FINFFGFNGT AGVWRIKALE
401: ECGGWLERTT VEDMDIAVRA HLCGWKFIYV NDVKCLCELP ESYETYKKQQ HRWHSGPMQL FRLCFSDILR SKVSWLKKAN LIFLFFLLRK LILPFYSFTL
501: FCIILPLTMF LPEAQLPAWV VCYVPGLMSV LNILPAPQSF PFIVPYLLFE NTMSVTKFNA MISGLFQLGS SYEWIVTKKS GRSSEADLVA MVENESESLL
601: KKNTVSRSSS ESGLAELNKL EMTKKTVKRK RNRIYRKELA LAFILLTASV RSLLSAQGIH FYFLLFQGFT FLVVGLDLIG EQPGKR

Best Arabidopsis Sequence Match ( AT3G07330.1 )
(BLAST)

001: MSRSQNEEFQ QWWNKQRDRN NHDVLYAGDD EAFLTVEIRT PATVDPDKDR IRTRTVRQLS RLYLLKFKQL ASSFLWIGNS FLYLVRTANR RIANDNPPSV
101: SSSARLYRLI KGFLVVVVLL LCFELAAYFK GWHFTPPSVA SAEVAVEVVY AWWLEIRASY LAPPLQSLTN VCIVLFLIQS VDRLVLVLGC FWIKLRRIKP
201: VASMEYPTKL VGEGVRLEDY PMVIVQIPMC NEKEVYQQSI GAVCMLDWPR ERMLVQVLDD SSELDVQQLI KAEVQKWQQR GVRIVYRHRL IRTGYKAGNL
301: KAAMNCEYVK DYEFVAIFDA DFQPPADFLK KTVPHFKGNE ELALVQTRWA FVNKDENLLT RLQNINLSFH FEVEQQVNGV FINFFGFNGT AGVWRIKALE
401: DCGGWLERTT VEDMDIAVRA HLCGWKFIYL NDVKCLCELP ESYEAYKKQQ YRWHSGPMQL FRLCFFDILR SKVSAAKKAN MIFLFFLLRK LILPFYSFTL
501: FCVILPLTMF FPEANLPSWV VCYIPGIMSI LNIIPAPRSF PFIVPYLLFE NTMSVTKFGA MISGLFKFDS SYEWVVTKKL GRSSEADLVA YAESGSLVES
601: TTIQRSSSDS GLTELSKLGA AKKAGKTKRN RLYRTEIALA FILLAASVRS LLSAQGIHFY FLLFQGITFV IVGLDLIGEQ VS

Arabidopsis Description

CSLC6Probable xyloglucan glycosyltransferase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRT3]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.