Factsheet for GSMUA_Achr6P27800_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 2
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P08270_001
GSMUA_Achr4P15460_001
GSMUA_Achr6P14800_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07330.1	GSMUA_Achr4P08270_001	AT3G16310.1	21798944
AT3G07330.1	GSMUA_Achr4P15460_001	AT3G16310.1	21798944
AT3G07330.1	GSMUA_Achr6P14800_001	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400053633	Potato	endoplasmic reticulum, plasma membrane, vacuole	20.74	76.14
Solyc09g057640.2.1	Tomato	cytosol, peroxisome, plasma membrane	76.01	71.57
AT3G07330.1	Thale cress	cytosol, peroxisome, plasma membrane	73.84	69.94
KRH07420	Soybean	plasma membrane	75.08	69.48
GSMUA_Achr7P19790_001	Banana	mitochondrion	14.71	69.34
CDY08003	Canola	cytosol, peroxisome, plasma membrane	74.15	68.92
KRH66156	Soybean	endoplasmic reticulum	74.92	68.46
Bra001246.1-P	Field mustard	cytosol, peroxisome, plasma membrane	73.84	68.24
CDX74051	Canola	cytosol, peroxisome, plasma membrane	73.68	68.1
VIT_00s0580g00010.t01	Wine grape	plasma membrane, plastid	77.86	66.8
GSMUA_Achr4P05880_001	Banana	plasma membrane	61.3	66.0
GSMUA_Achr7P00750_001	Banana	plasma membrane	63.0	65.22
GSMUA_Achr4P02100_001	Banana	plasma membrane	59.44	64.76
GSMUA_Achr6P30200_001	Banana	cytosol	61.61	64.51
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plasma membrane	62.07	64.47
PGSC0003DMT400095504	Potato	plasma membrane	49.54	63.87
GSMUA_Achr5P01920_001	Banana	plasma membrane	63.47	63.66
GSMUA_Achr3P28000_001	Banana	plasma membrane	62.69	63.58
GSMUA_Achr6P01880_001	Banana	golgi, peroxisome, plasma membrane	61.76	63.33
GSMUA_Achr4P32270_001	Banana	plasma membrane	62.23	63.01
GSMUA_Achr7P19500_001	Banana	cytosol, peroxisome, plasma membrane	60.06	62.88
GSMUA_Achr4P23120_001	Banana	cytosol, peroxisome, plasma membrane	64.24	58.95
GSMUA_Achr11P...	Banana	plasma membrane	31.42	46.45
GSMUA_Achr9P26970_001	Banana	endoplasmic reticulum, extracellular	12.85	43.68
GSMUA_Achr9P26980_001	Banana	plasma membrane	19.66	42.47
GSMUA_AchrUn_...	Banana	plasma membrane	34.06	41.83
GSMUA_Achr2P20260_001	Banana	plasma membrane	34.37	41.65
GSMUA_Achr6P07540_001	Banana	plasma membrane	33.75	41.29
GSMUA_Achr10P...	Banana	plasma membrane	33.9	41.09
GSMUA_Achr6P02600_001	Banana	extracellular, plasma membrane	30.96	41.07
GSMUA_Achr10P...	Banana	plasma membrane	33.44	41.06
GSMUA_Achr6P13400_001	Banana	plasma membrane	33.44	39.85
GSMUA_Achr7P21070_001	Banana	plasma membrane	31.58	38.35
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, vacuole	30.19	36.45
GSMUA_Achr7P18150_001	Banana	plasma membrane	30.34	36.16
Zm00001d010955_P001	Maize	extracellular	10.22	35.68
GSMUA_Achr5P15920_001	Banana	plasma membrane	32.35	34.83
GSMUA_Achr3P01830_001	Banana	cytosol, peroxisome, plasma membrane	32.82	31.41

Protein Annotations

MapMan:21.2.1.1.1	Gene3D:3.90.550.10	GO:GO:0000003	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0005802	GO:GO:0008150	GO:GO:0009856
GO:GO:0016020	GO:GO:0016021	GO:GO:0048868	EnsemblPlantsGene:GSMUA_Achr6G27800_001	EnsemblPlants:GSMUA_Achr6P27800_001	EnsemblPlants:GSMUA_Achr6T27800_001
InterPro:IPR029044	UniProt:M0TAS5	InterPro:Nucleotide-diphossugar_trans	PFAM:PF13641	PANTHER:PTHR32044	PANTHER:PTHR32044:SF14
SUPFAM:SSF53448	TMHMM:TMhelix	UniParc:UPI000296862F	SEG:seg	:	:

Description

Probable xyloglucan glycosyltransferase 6 [Source:GMGC_GENE;Acc:GSMUA_Achr6G27800_001]

Coordinates

chr6:+:28202903..28207538

Molecular Weight (calculated)

73371.2 Da

IEP (calculated)

9.716

GRAVY (calculated)

0.192

Length

646 amino acids

Sequence
(BLAST)

001: MSPPPPNYEF QEWWNKERFK AQGLLSPYPS PPAAAAAVDA SADAAAVDVS TPTTPAAAGK SRGRSPRQLS WLLLLRLHHS AAILASLPSR FLTLLRTAAR
101: RISTATRRPS PVSRLYRLIR AFLVLAVVLL ALELIVYANW LVIRARYLAP PVQMMVNVCI VLFLVQSVDR VVLVLGFIYI RLRGVKPVAA VDYGSQGDLE
201: VGGAVNVEDY PMVLLQIPMC NEREVYQQSI AAVCIQDWPR ERMLIQVLDD SDDMDVQNLI KAEVQKWQQK GVRILYRHRL IRTGYKAGNL KSAMSCDYVK
301: DYEFVAIFDA DFQPAPDFLK KTIPHFKGND DLALVQARWA FVNKDENLLT RLQNINLSFH FEVEQQVNGI FINFFGFNGT AGVWRIKALE ESGGWLERTT
401: VEDMDIAVRA HLCGWKFIFL NDVKCLCELP ESYEAYKKQQ HRWHSGPMQL LRMCFLDILR SKVSFSKKAN LIFLFFLLRK LILPFYSFTL FCIILPLSMF
501: LPEAHLPAWV VCYVPGLMSV ISILPAPRSF PFIVPYLLFE NTMSVTKFNA MISGLFKFGS SYEWIVTKKL GRSSEADLLN KLEVTKKAGK TRRNRLYRKE
601: LALAFILLTA SVRSLLSAQG IHFYFLLFQG ITFLAVGLDL IGEQVS

Best Arabidopsis Sequence Match ( AT3G07330.1 )
(BLAST)

001: MSRSQNEEFQ QWWNKQRDRN NHDVLYAGDD EAFLTVEIRT PATVDPDKDR IRTRTVRQLS RLYLLKFKQL ASSFLWIGNS FLYLVRTANR RIANDNPPSV
101: SSSARLYRLI KGFLVVVVLL LCFELAAYFK GWHFTPPSVA SAEVAVEVVY AWWLEIRASY LAPPLQSLTN VCIVLFLIQS VDRLVLVLGC FWIKLRRIKP
201: VASMEYPTKL VGEGVRLEDY PMVIVQIPMC NEKEVYQQSI GAVCMLDWPR ERMLVQVLDD SSELDVQQLI KAEVQKWQQR GVRIVYRHRL IRTGYKAGNL
301: KAAMNCEYVK DYEFVAIFDA DFQPPADFLK KTVPHFKGNE ELALVQTRWA FVNKDENLLT RLQNINLSFH FEVEQQVNGV FINFFGFNGT AGVWRIKALE
401: DCGGWLERTT VEDMDIAVRA HLCGWKFIYL NDVKCLCELP ESYEAYKKQQ YRWHSGPMQL FRLCFFDILR SKVSAAKKAN MIFLFFLLRK LILPFYSFTL
501: FCVILPLTMF FPEANLPSWV VCYIPGIMSI LNIIPAPRSF PFIVPYLLFE NTMSVTKFGA MISGLFKFDS SYEWVVTKKL GRSSEADLVA YAESGSLVES
601: TTIQRSSSDS GLTELSKLGA AKKAGKTKRN RLYRTEIALA FILLAASVRS LLSAQGIHFY FLLFQGITFV IVGLDLIGEQ VS

Arabidopsis Description

CSLC6Probable xyloglucan glycosyltransferase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRT3]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.