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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • cytosol 1
  • plasma membrane 2
  • golgi 1
  • mitochondrion 1
  • peroxisome 1
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400006495

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G07330.1 PGSC0003DMT400006495 AT3G16310.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc09g057640.2.1 Tomato cytosol, peroxisome, plasma membrane 86.23 62.97
GSMUA_Achr6P27800_001 Banana plasma membrane 63.87 49.54
AT3G07330.1 Thale cress cytosol, peroxisome, plasma membrane 67.27 49.41
VIT_00s0580g00010.t01 Wine grape plasma membrane, plastid 72.26 48.07
Bra001246.1-P Field mustard cytosol, peroxisome, plasma membrane 67.07 48.07
CDY08003 Canola cytosol, peroxisome, plasma membrane 66.67 48.06
CDX74051 Canola cytosol, peroxisome, plasma membrane 66.87 47.93
KRH07420 Soybean plasma membrane 66.27 47.56
KRH66156 Soybean endoplasmic reticulum 66.27 46.96
PGSC0003DMT400024646 Potato golgi, peroxisome, plasma membrane 57.68 41.64
PGSC0003DMT400026046 Potato plasma membrane 54.09 41.44
PGSC0003DMT400030125 Potato plasma membrane 52.89 39.79
PGSC0003DMT400012668 Potato plasma membrane 55.69 37.6
PGSC0003DMT400060105 Potato cytosol 26.55 30.79
PGSC0003DMT400072644 Potato plasma membrane 31.94 30.02
PGSC0003DMT400007050 Potato mitochondrion 31.94 30.02
PGSC0003DMT400018425 Potato plasma membrane 30.94 29.08
PGSC0003DMT400070323 Potato plasma membrane, plastid 30.54 28.87
PGSC0003DMT400068221 Potato plasma membrane 29.94 28.63
PGSC0003DMT400009922 Potato plasma membrane 6.19 12.76
PGSC0003DMT400053633 Potato endoplasmic reticulum, plasma membrane, vacuole 1.8 5.11
Zm00001d010955_P001 Maize extracellular 1.0 2.7
Protein Annotations
EnsemblPlants:PGSC0003DMT400095504EnsemblPlantsGene:PGSC0003DMG400045075Gene3D:3.90.550.10GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:IPR029044InterPro:Nucleotide-diphossugar_transPANTHER:PTHR32044PANTHER:PTHR32044:SF14PFAM:PF13641PGSC:PGSC0003DMG400045075
SEG:segSUPFAM:SSF53448TMHMM:TMhelixUniParc:UPI000295CA57UniProt:M1DWG2MapMan:50.2.4
Description
Xyloglucan glycosyltransferase 6 [Source:PGSC_GENE;Acc:PGSC0003DMG400045075]
Coordinates
chr9:-:32090614..32094115
Molecular Weight (calculated)
58107.7 Da
IEP (calculated)
6.823
GRAVY (calculated)
-0.140
Length
501 amino acids
Sequence
(BLAST)
001: MSRPPNQEFQ EWWNKQQSAN GSEDLFPSSS ENSRFLTVEI SSPTVAEKER TRSARQLSWI YLLKFQQIAN SIAFLTSGFI SIVCTANRRI VTSNSAHPRS
101: DSRRYRVIKV FLTVSVILLV FELVAYFRGW HFSPLTVESA SAEVLDLAEY VYANWLDIRA NYLAPPLQSL ISMCIVLFLI QSVDRVVLVL GCFWIKFRGL
201: KPLAEIDYSS DVENLNAEYY PMVLLQIPMC NEREFIHFCR TSLLKAKCRA VCVQDWPKDR MLVQILDDSD DLGVQGLIKA EVQKWQQRGV HIIYRHCLIR
301: TGYKAGNLKS AMSCDYVKNY EFVAIFDADF QPTPDFLKNT VPYFKGHDDV ALVQTRWAFV NKDENLVTRL QNINLAFHFE VEQQVNGWFI NFFGFNGTAG
401: VWRIKALEEC GGWLERTTVE DMDIAVRAHL CGWKFIYVND VKCLCELPES YETYKKQQHR WHSGPMQLFR LCFSDILRSK LFKGDASELS DEGKEDIEYR
501: M
Best Arabidopsis Sequence Match ( AT2G24630.1 )
(BLAST)
001: MAPRFDFSDL WAKETRRGTP VVVKMENPNY SIVEVEEPDS AFQPMEKSRG KNAKQVTWVL LLKAHKAVGC LTWVATVFWS LLGSVKRRLS FTHPLGSERL
101: GRDGWLFSAI KLFLVASLAI LAFELVAYYR GWHYFKNPNL HIPTSKLEIQ SLLHLFYVGW LSLRADYIAP PIKALSKFCI VLFLVQSVDR LILCLGCLWI
201: KFKKIKPRID EEHFRNDDFE GSGSEYPMVL VQIPMCNERE VYEQSISAVC QLDWPKDRLL VQVLDDSDDE SIQELIRDEV TKWSQKGVNI IYRHRLVRTG
301: YKAGNLKSAM SCDYVEAYEF VAIFDADFQP NSDFLKLTVP HFKEKPELGL VQARWAFVNK DENLLTRLQN INLCFHFEVE QQVNGVFLNF FGFNGTAGVW
401: RIKALEESGG WLERTTVEDM DIAVRAHLHG WKFIYLNDVK VLCEVPESYE AYKKQQHRWH SGPMQLFRLC LRSILTSKIA MWKKANLILL FFLLRKLILP
501: FYSFTLFCVI LPITMFVPEA ELPIWVICYV PIFMSLLNIL PAPKSFPFIV PYLLFENTMS VTKFNAMVSG LFQLGSSYEW IVTKKAGRSS ESDLLALTDK
601: ESEKMPNQIL RGVSDSELLE ISQVEEQKKQ PVSVKKTNKI FHKELALAFL LLTAAVRSLL ASQGVHFYFL LFQGLTFLLV GLDLIGEQMS
Arabidopsis Description
CSLC8Probable xyloglucan glycosyltransferase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJA2]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.