CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX97739
CDY30157

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07330.1	CDX97739	AT3G16310.1	21798944
AT3G07330.1	CDY30157	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001246.1-P	Field mustard	cytosol, peroxisome, plasma membrane	98.99	98.43
CDX74051	Canola	cytosol, peroxisome, plasma membrane	98.99	98.43
AT3G07330.1	Thale cress	cytosol, peroxisome, plasma membrane	92.09	93.84
PGSC0003DMT400053633	Potato	endoplasmic reticulum, plasma membrane, vacuole	19.42	76.7
GSMUA_Achr6P27800_001	Banana	plasma membrane	68.92	74.15
Solyc09g057640.2.1	Tomato	cytosol, peroxisome, plasma membrane	72.23	73.18
CDY00138	Canola	cytosol, peroxisome, plasma membrane	47.91	72.87
CDY04011	Canola	cytosol, peroxisome, plasma membrane	47.19	71.77
VIT_00s0580g00010.t01	Wine grape	plasma membrane, plastid	76.69	70.78
KRH07420	Soybean	plasma membrane	71.08	70.77
KRH66156	Soybean	endoplasmic reticulum	71.94	70.72
CDY34018	Canola	cytosol, endoplasmic reticulum, plasma membrane	56.98	69.84
PGSC0003DMT400095504	Potato	plasma membrane	48.06	66.67
CDY57881	Canola	extracellular	11.22	62.4
CDX76802	Canola	plasma membrane	59.14	62.27
CDX83148	Canola	plasma membrane	60.86	61.13
CDX72314	Canola	plasma membrane	60.0	60.96
CDX85189	Canola	plasma membrane	57.55	60.88
CDX86448	Canola	plasma membrane	57.41	60.73
CDY20029	Canola	plasma membrane	57.41	60.64
CDY13445	Canola	plasma membrane	59.71	60.41
CDY34762	Canola	endoplasmic reticulum, peroxisome, plasma membrane	59.42	60.38
CDX68766	Canola	plasma membrane	60.58	54.32
CDY60854	Canola	plasma membrane	60.72	48.23
CDY47235	Canola	plasma membrane	22.59	48.16
CDX75177	Canola	cytosol	19.86	47.42
CDY09672	Canola	golgi	22.73	44.89
CDY47369	Canola	plasma membrane	18.99	44.0
CDX69464	Canola	cytosol, peroxisome, plasma membrane	27.63	43.34
CDX70677	Canola	cytosol, peroxisome, plasma membrane	27.48	43.12
CDY10358	Canola	plasma membrane	32.23	42.11
CDX70286	Canola	plasma membrane	32.23	42.11
CDY11268	Canola	plasma membrane	32.09	41.92
CDY32110	Canola	mitochondrion	25.76	40.68
CDY54604	Canola	plasma membrane	30.65	40.65
CDX88785	Canola	plasma membrane	29.78	40.59
CDY44151	Canola	plasma membrane	32.37	40.54
CDY35710	Canola	plasma membrane	29.78	40.51
CDX78675	Canola	plasma membrane	29.35	40.48
CDX79614	Canola	plasma membrane	32.09	40.47
CDY04707	Canola	plasma membrane	32.23	40.36
CDX72181	Canola	plasma membrane	30.36	40.34
CDY26949	Canola	plasma membrane	29.5	40.2
CDY09164	Canola	plasma membrane	29.5	40.2
CDX71011	Canola	plasma membrane	29.5	40.2
CDY26505	Canola	plasma membrane	29.64	40.16
CDY32098	Canola	plasma membrane	31.22	39.96
CDY01129	Canola	plasma membrane	30.07	38.85
CDY68733	Canola	plasma membrane	15.11	38.6
CDY40295	Canola	plasma membrane	30.07	38.28
CDX90506	Canola	plasma membrane	30.36	38.16
CDY40448	Canola	plasma membrane	31.37	36.82
CDX80885	Canola	plasma membrane	26.19	34.67
CDY47368	Canola	endoplasmic reticulum, extracellular	2.88	34.48
CDX84607	Canola	mitochondrion	5.18	30.0
CDY32100	Canola	cytosol	0.72	29.41
CDX92340	Canola	plasma membrane	30.07	22.12

Protein Annotations

EnsemblPlants:CDY08003	EnsemblPlantsGene:GSBRNA2T00125246001	Gene3D:3.90.550.10	GO:A0A078F8D0	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:Glyco_trans_2-like	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	PANTHER:PTHR32044	PANTHER:PTHR32044:SF14
PFAM:PF13632	ProteinID:CDY08003	ProteinID:CDY08003.1	SEG:seg	SUPFAM:SSF53448	TMHMM:TMhelix
UniParc:UPI0004EE3817	UniProt:A0A078F8D0	MapMan:21.2.1.1.1	:	:	:

Description

BnaC03g35200DBnaC03g35200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F8D0]

Coordinates

chrLK031982:+:554613..557971

Molecular Weight (calculated)

79684.3 Da

IEP (calculated)

9.092

GRAVY (calculated)

0.064

Length

695 amino acids

Sequence
(BLAST)

001: MSRSQNEEFQ QWWNKQRNRD HDGGDDEAFL TVEIRTPAVD PTDKDRIRTR TLRQLSRLYL LRLKQLASSS VWIASSFLHL LRTANRRIAN DNPPSSTSSA
101: RLYRLIKAFL VLVVLLLCFE LAAYFKGWHF TPPSVASAEA AVEVAYAWWL EIRASYLAPP LQSLTNVCIV LFLIQSVDRL VLVLGCFWIK LRRIKPVAAM
201: EYPAKPVGEG IRLEDYPMVL VQIPMCNEKE VYQQSIGAVC MLDWPKERML IQILDDSSEL DVQVLIKAEV QKWQQRGVRI VYRHRLIRTG YKAGNLKAAM
301: NCEYVKDYEF VAIFDADFQP PAEFLKKTVP HFKGREDLAL VQTRWAFVNK DENLLTRLQN INLSFHFEVE QQVNGVFINF FGFNGTAGVW RIKALEDCGG
401: WLERTTVEDM DIAVRAHLCG WKFIYLNDVK CLCELPESYE AYKKQQYRWH SGPMQLFRLC FMDILRSKVS VGKKANMIFL FFLLRKLILP FYSFTLFCVI
501: LPLTMFFPEA NLPSWVVCYI PGIMSILNII PAPRSFPFIV PYLLFENTMS VTKFGAMISG LFKFGSSYEW VVTKKLGRSS EADLIAYAES GSLVESTNIQ
601: RSSSDSGLTE LSKLGAAKKA GKTKRNRLYR TEIALAFILL AASVRSLLSA QGIHFYFLLF QGLTFVIVGL DLIGEQVSYG RKKGFDDDDL SLLWS

Best Arabidopsis Sequence Match ( AT3G07330.1 )
(BLAST)

001: MSRSQNEEFQ QWWNKQRDRN NHDVLYAGDD EAFLTVEIRT PATVDPDKDR IRTRTVRQLS RLYLLKFKQL ASSFLWIGNS FLYLVRTANR RIANDNPPSV
101: SSSARLYRLI KGFLVVVVLL LCFELAAYFK GWHFTPPSVA SAEVAVEVVY AWWLEIRASY LAPPLQSLTN VCIVLFLIQS VDRLVLVLGC FWIKLRRIKP
201: VASMEYPTKL VGEGVRLEDY PMVIVQIPMC NEKEVYQQSI GAVCMLDWPR ERMLVQVLDD SSELDVQQLI KAEVQKWQQR GVRIVYRHRL IRTGYKAGNL
301: KAAMNCEYVK DYEFVAIFDA DFQPPADFLK KTVPHFKGNE ELALVQTRWA FVNKDENLLT RLQNINLSFH FEVEQQVNGV FINFFGFNGT AGVWRIKALE
401: DCGGWLERTT VEDMDIAVRA HLCGWKFIYL NDVKCLCELP ESYEAYKKQQ YRWHSGPMQL FRLCFFDILR SKVSAAKKAN MIFLFFLLRK LILPFYSFTL
501: FCVILPLTMF FPEANLPSWV VCYIPGIMSI LNIIPAPRSF PFIVPYLLFE NTMSVTKFGA MISGLFKFDS SYEWVVTKKL GRSSEADLVA YAESGSLVES
601: TTIQRSSSDS GLTELSKLGA AKKAGKTKRN RLYRTEIALA FILLAASVRS LLSAQGIHFY FLLFQGITFV IVGLDLIGEQ VS

Arabidopsis Description

CSLC6Probable xyloglucan glycosyltransferase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRT3]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.