Factsheet for Bra001246.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

cytosol 2
plasma membrane 3
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, peroxisome, secretory
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	golgi, plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027174.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07330.1	Bra027174.1-P	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74051	Canola	cytosol, peroxisome, plasma membrane	99.71	99.71
CDY08003	Canola	cytosol, peroxisome, plasma membrane	98.43	98.99
AT3G07330.1	Thale cress	cytosol, peroxisome, plasma membrane	91.27	93.55
PGSC0003DMT400053633	Potato	endoplasmic reticulum, plasma membrane, vacuole	19.03	75.57
GSMUA_Achr6P27800_001	Banana	plasma membrane	68.24	73.84
Solyc09g057640.2.1	Tomato	cytosol, peroxisome, plasma membrane	72.1	73.47
VIT_00s0580g00010.t01	Wine grape	plasma membrane, plastid	76.25	70.78
KRH07420	Soybean	plasma membrane	70.53	70.63
KRH66156	Soybean	endoplasmic reticulum	71.39	70.58
PGSC0003DMT400095504	Potato	plasma membrane	48.07	67.07
Bra007838.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	58.51	61.97
Bra000635.1-P	Field mustard	plasma membrane	60.37	60.98
Bra023993.1-P	Field mustard	plasma membrane	57.22	60.15
Bra039061.1-P	Field mustard	plasma membrane	57.94	59.91
Bra025323.1-P	Field mustard	plasma membrane	56.94	58.96
Bra033039.1-P	Field mustard	plasma membrane	22.32	47.85
Bra011284.1-P	Field mustard	plasma membrane	59.94	43.15
Bra009512.1-P	Field mustard	plasma membrane	32.05	42.11
Bra005779.1-P	Field mustard	plasma membrane	31.9	41.92
Bra023020.1-P	Field mustard	plasma membrane	31.9	40.69
Bra020212.1-P	Field mustard	plasma membrane	31.04	40.64
Bra007207.1-P	Field mustard	plasma membrane	30.33	40.54
Bra006343.1-P	Field mustard	plasma membrane	29.18	40.48
Bra008638.1-P	Field mustard	plasma membrane	29.18	40.4
Bra006633.1-P	Field mustard	plasma membrane	29.33	40.2
Bra024603.1-P	Field mustard	plasma membrane	31.9	40.18
Bra012702.1-P	Field mustard	plasma membrane	28.9	40.0
Bra012416.1-P	Field mustard	plasma membrane	29.76	38.1
Zm00001d010955_P001	Maize	extracellular	9.44	35.68
Bra017305.1-P	Field mustard	plasma membrane	30.76	33.49
Bra032705.1-P	Field mustard	plasma membrane	29.76	29.21
Bra002426.1-P	Field mustard	plasma membrane	31.47	22.7

Protein Annotations

MapMan:21.2.1.1.1	Gene3D:3.90.550.10	EnsemblPlantsGene:Bra001246	EnsemblPlants:Bra001246.1	EnsemblPlants:Bra001246.1-P	GO:GO:0000003
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005794
GO:GO:0005802	GO:GO:0008150	GO:GO:0009856	GO:GO:0016020	GO:GO:0016021	GO:GO:0048868
InterPro:Glyco_trans_2-like	InterPro:IPR029044	UniProt:M4CAL7	InterPro:Nucleotide-diphossugar_trans	PFAM:PF13632	PANTHER:PTHR32044
PANTHER:PTHR32044:SF14	SUPFAM:SSF53448	TMHMM:TMhelix	UniParc:UPI00025404BE	SEG:seg	:

Description

AT3G07330 (E=0.0) ATCSLC06, CSLC06, ATCSLC6 | ATCSLC6 (CELLULOSE-SYNTHASE LIKE C6); cellulose synthase/ transferase, transferring glycosyl groups

Coordinates

chrA03:-:15500646..15503946

Molecular Weight (calculated)

79807.3 Da

IEP (calculated)

8.826

GRAVY (calculated)

0.064

Length

699 amino acids

Sequence
(BLAST)

001: MSRSQNEEFQ QWWNKQRNRD HDGGGGGGDD EAFLTVEIRT PAVDPTDKDR IRTRTLRQLS RLYLLRLKQL ASSSVWIASS FLHLLRTANR RIANDNPPSS
101: TSSARLYRLI KAFLVVVVLL LCFELAAYFK GWHFTPPSVA SAEAAVEVAY AWWLEIRASY LAPPLQSLTN VCIVLFLIQS VDRLVLVLGC FWIKLRRIKP
201: VAAMEYPAKP VGEGIRLEDY PMVLVQIPMC NEKEVYQQSI GAVCMLDWPK ERMLIQILDD SSELDVQVLI KAEVQKWQQR GVRIVYRHRL IRTGYKAGNL
301: KAAMNCEYVK DYEFVAIFDA DFQPPAEFLK KTVPHFKGRD DLALVQTRWA FVNKDENLLT RLQNINLSFH FEVEQQVNGV FINFFGFNGT AGVWRIKALE
401: DCGGWLERTT VEDMDIAVRA HLCGWKFIYL NDVKCLCELP ESYEAYKKQQ YRWHSGPMQL FRLCFMDILR SKVSVGKKAN MIFLFFLLRK LILPFYSFTL
501: FCVILPLTMF FPEANLPSWV VCYIPGIMSI LNIIPAPRSF PFIVPYLLFE NTMSVTKFGA MISGLFKFGS SYEWVVTKKL GRSSEADLIA YAESGSLVES
601: TNIQRSSSDS GLTELSKLGA AKKAGKTKRN RLYRTEIALA FILLAASVRS LLSAQGIHFY FLLFQGLTFV IVGLDLIGEQ GEVAEKKGFD DDDLSLLWS

Best Arabidopsis Sequence Match ( AT3G07330.1 )
(BLAST)

001: MSRSQNEEFQ QWWNKQRDRN NHDVLYAGDD EAFLTVEIRT PATVDPDKDR IRTRTVRQLS RLYLLKFKQL ASSFLWIGNS FLYLVRTANR RIANDNPPSV
101: SSSARLYRLI KGFLVVVVLL LCFELAAYFK GWHFTPPSVA SAEVAVEVVY AWWLEIRASY LAPPLQSLTN VCIVLFLIQS VDRLVLVLGC FWIKLRRIKP
201: VASMEYPTKL VGEGVRLEDY PMVIVQIPMC NEKEVYQQSI GAVCMLDWPR ERMLVQVLDD SSELDVQQLI KAEVQKWQQR GVRIVYRHRL IRTGYKAGNL
301: KAAMNCEYVK DYEFVAIFDA DFQPPADFLK KTVPHFKGNE ELALVQTRWA FVNKDENLLT RLQNINLSFH FEVEQQVNGV FINFFGFNGT AGVWRIKALE
401: DCGGWLERTT VEDMDIAVRA HLCGWKFIYL NDVKCLCELP ESYEAYKKQQ YRWHSGPMQL FRLCFFDILR SKVSAAKKAN MIFLFFLLRK LILPFYSFTL
501: FCVILPLTMF FPEANLPSWV VCYIPGIMSI LNIIPAPRSF PFIVPYLLFE NTMSVTKFGA MISGLFKFDS SYEWVVTKKL GRSSEADLVA YAESGSLVES
601: TTIQRSSSDS GLTELSKLGA AKKAGKTKRN RLYRTEIALA FILLAASVRS LLSAQGIHFY FLLFQGITFV IVGLDLIGEQ VS

Arabidopsis Description

CSLC6Probable xyloglucan glycosyltransferase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRT3]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.