Factsheet for Bra023993.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
plasma membrane 2
golgi 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra006619.1-P
Bra020182.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G31590.1	Bra002403.1-P	AT5G22290.1	21798944
AT4G31590.1	Bra006619.1-P	AT5G22290.1	21798944
AT4G31590.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13445	Canola	plasma membrane	99.4	96.22
CDX72314	Canola	plasma membrane	97.59	94.88
AT4G31590.1	Thale cress	plasma membrane	95.79	92.05
Bra007838.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	83.91	84.55
VIT_04s0069g00780.t01	Wine grape	plasma membrane	82.11	78.67
KRH61950	Soybean	plasma membrane	80.6	77.34
KRH52609	Soybean	plasma membrane	79.85	76.62
VIT_09s0018g01950.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	79.7	76.48
Os08t0253800-01	Rice	cytosol, peroxisome, plasma membrane	53.38	74.11
KRH16165	Soybean	plasma membrane	76.99	73.88
PGSC0003DMT400024646	Potato	golgi, peroxisome, plasma membrane	76.54	73.34
KRH04930	Soybean	plasma membrane	76.39	73.3
Solyc08g006310.2.1	Tomato	golgi, peroxisome, plasma membrane	76.24	73.05
Bra011284.1-P	Field mustard	plasma membrane	96.99	66.43
Bra039061.1-P	Field mustard	plasma membrane	66.17	65.09
Bra025323.1-P	Field mustard	plasma membrane	66.02	65.04
Bra000635.1-P	Field mustard	plasma membrane	67.07	64.45
HORVU3Hr1G000340.2	Barley	plasma membrane	61.95	63.78
TraesCSU01G038900.1	Wheat	cytosol, peroxisome, plasma membrane	69.47	61.6
TraesCS3B01G000600.1	Wheat	cytosol, peroxisome, plasma membrane	69.47	61.52
Zm00001d049336_P001	Maize	plasma membrane	70.23	61.13
Zm00001d024178_P002	Maize	cytosol, peroxisome, plasma membrane	69.32	60.9
TraesCS3D01G010500.1	Wheat	cytosol, peroxisome, plasma membrane	69.32	60.82
KRH57821	Soybean	plasma membrane	21.95	60.58
KXG24822	Sorghum	peroxisome	69.02	60.39
Bra033039.1-P	Field mustard	plasma membrane	28.42	57.98
Bra001246.1-P	Field mustard	cytosol, peroxisome, plasma membrane	60.15	57.22
Bra005779.1-P	Field mustard	plasma membrane	33.98	42.48
Bra009512.1-P	Field mustard	plasma membrane	33.83	42.29
Bra006343.1-P	Field mustard	plasma membrane	30.53	40.28
Bra008638.1-P	Field mustard	plasma membrane	30.38	40.0
Bra023020.1-P	Field mustard	plasma membrane	32.63	39.6
Bra020212.1-P	Field mustard	plasma membrane	31.58	39.33
Bra006633.1-P	Field mustard	plasma membrane	29.77	38.82
Bra012416.1-P	Field mustard	plasma membrane	31.58	38.46
Bra024603.1-P	Field mustard	plasma membrane	31.88	38.2
Bra012702.1-P	Field mustard	plasma membrane	28.87	38.02
Bra007207.1-P	Field mustard	plasma membrane	29.47	37.48
Bra017305.1-P	Field mustard	plasma membrane	31.73	32.87
Bra032705.1-P	Field mustard	plasma membrane	31.13	29.07
Bra002426.1-P	Field mustard	plasma membrane	31.43	21.57

Protein Annotations

EnsemblPlants:Bra023993.1	EnsemblPlants:Bra023993.1-P	EnsemblPlantsGene:Bra023993	Gene3D:3.90.550.10	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:Glyco_trans_2-like	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	PANTHER:PTHR32044	PANTHER:PTHR32044:SF7
PFAM:PF13632	SEG:seg	SUPFAM:SSF53448	TMHMM:TMhelix	UniParc:UPI0002540F77	UniProt:M4E5D9
MapMan:21.2.1.1.1	:	:	:	:	:

Description

AT4G31590 (E=8e-222) ATCSLC05, CSLC05, ATCSLC5 | ATCSLC5 (CELLULOSE-SYNTHASE LIKE C5); cellulose synthase/ transferase, transferring glycosyl groups

Coordinates

chrA03:-:28362482..28364844

Molecular Weight (calculated)

76616.9 Da

IEP (calculated)

8.807

GRAVY (calculated)

0.110

Length

665 amino acids

Sequence
(BLAST)

001: MSPRLDFSDW WAKDTRKGTP VVVKMENPNY SVVEIEGPDS AFRPVERSRG RKNAKQVTWV LLLKAHRAVG CLTWLATVFW SLLGSIKKRL SFTHPLGSER
101: LGRDRWLFSA IKLFLAVSLL ILGFEIVAYL RGWHYFENHI PTSTLEIQSL LHLVYVGWLG LRADYIAPLI KALSKFCIVL FLIQSVDRLI LCLGCFWIKY
201: KKIKPRFDEE PFRNDDAEGC GYVYPMVLVQ IPMCNEREVL DDSNDESIQQ LIKAEVAKWS QKGVNIIYRH RLVRTGYKAG NLKSAMSCDY VEAYEFVAIF
301: DADFQPNPDF LKLTVPHFKD NPELGLVQAR WTFVNKDENL LTRLQNINLC FHFEVEQQVS GVFLNFFGFN GTAGVWRIKA LEESGGWLER TTVEDMDIAV
401: RAHLHGWKFI YLNDVKVLCE VPESYEAYKK QQHRWHSGPM QLFRLCLGSI LTSKIAIWKK ANLILLFFLL RKLILPFYSF TLFCIILPLT MFVPEAELPV
501: WVICYIPVFM SFLNLLPSPK SFPFIVPYLL FENTMSVTKF NAMVSGLFQL GSSYEWIVTK KAGRSSESDL LSITEKETLD KRSQLLRGVS DSELLELNQL
601: EEQKQRKPVK KTNKIFHKEL ALAFLLLTAA VRSLLAAQGV HFYFLLFQGV TFLLVGLDLI GEQMS

Best Arabidopsis Sequence Match ( AT4G31590.1 )
(BLAST)

001: MAPRLDFSDW WAKDTRKGTP VVVKMENPNY SVVEIDGPDS AFRPVEKSRG KNAKQVTWVL LLKAHRAVGC LTWLATVFWS LLGAIKKRLS FTHPLGSEKL
101: GRDRWLFTAI KLFLAVSLVI LGFEIVAYFR GWHYFQSPSL HIPTSTLEIQ SLFHLVYVGW LTLRADYIAP PIKALSKFCI VLFLIQSVDR LVLCLGCFWI
201: KYKKIKPRFD EEPFRNDDAE GSGSEYPMVL VQIPMCNERE VYEQSISAVC QLDWPKDRIL VQVLDDSNDE SIQQLIKAEV AKWSQKGVNI IYRHRLVRTG
301: YKAGNLKSAM SCDYVEAYEY VAIFDADFQP TPDFLKLTVP HFKDNPELGL VQARWTFVNK DENLLTRLQN INLCFHFEVE QQVNGVFLNF FGFNGTAGVW
401: RIKALEESGG WLERTTVEDM DIAVRAHLHG WKFIYLNDVK VLCEVPESYE AYKKQQHRWH SGPMQLFRLC LGSILTSKIA IWKKANLILL FFLLRKLILP
501: FYSFTLFCII LPLTMFVPEA ELPVWVICYI PVFMSFLNLL PSPKSFPFIV PYLLFENTMS VTKFNAMVSG LFQLGSSYEW IVTKKAGRSS ESDLLSITEK
601: ETPTKKSQLL RGVSDSELLE LSQLEEQKQA VSKKPVKKTN KIYHKELALA FLLLTAALRS LLAAQGVHFY FLLFQGVTFL LVGLDLIGEQ MS

Arabidopsis Description

CSLC5CSLC5 [Source:UniProtKB/TrEMBL;Acc:A0A178UYZ0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.