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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • vacuole 2
  • plasma membrane 4
  • plastid 1
  • extracellular 1
  • endoplasmic reticulum 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, plastid, secretory
BaCelLo:nucleus
MultiLoc:vacuole
Plant-mPloc:plasma membrane, plastid
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra003804.1-P golgi
Bra008146.1-P golgi
Bra015915.1-P golgi
Bra025323.1-P golgi
Bra033039.1-P golgi
Bra039061.1-P golgi

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G28180.1 Bra003804.1-P AT1G74380.1 22665445
AT3G28180.1 Bra008146.1-P AT1G74380.1 22665445
AT3G28180.1 Bra015915.1-P AT1G74380.1 22665445
AT3G28180.1 Bra025323.1-P AT3G28180.1 22665445
AT3G28180.1 Bra033039.1-P AT3G28180.1 22665445
AT3G28180.1 Bra039061.1-P AT3G28180.1 22665445
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY47235 Canola plasma membrane 100.0 100.0
Bra025323.1-P Field mustard plasma membrane 92.94 44.89
Bra039061.1-P Field mustard plasma membrane 92.02 44.38
AT3G28180.1 Thale cress plasma membrane 91.41 44.28
VIT_14s0066g01730.t01 Wine grape plasma membrane 69.02 33.89
KRH18597 Soybean endoplasmic reticulum, peroxisome, plasma membrane 66.26 32.73
KRG93391 Soybean plasma membrane 66.26 32.73
Solyc02g089640.2.1 Tomato plasma membrane 64.72 32.26
PGSC0003DMT400026046 Potato plasma membrane 64.72 32.26
Bra023993.1-P Field mustard plasma membrane 57.98 28.42
Bra007838.1-P Field mustard cytosol, endoplasmic reticulum, plasma membrane 53.07 26.21
Bra000635.1-P Field mustard plasma membrane 53.68 25.29
Bra001246.1-P Field mustard cytosol, peroxisome, plasma membrane 47.85 22.32
Bra011284.1-P Field mustard plasma membrane 56.75 19.05
Bra020212.1-P Field mustard plasma membrane 19.33 11.8
Bra023020.1-P Field mustard plasma membrane 19.02 11.31
Bra008638.1-P Field mustard plasma membrane 17.48 11.29
Bra005779.1-P Field mustard plasma membrane 18.4 11.28
Bra012416.1-P Field mustard plasma membrane 18.71 11.17
Bra024603.1-P Field mustard plasma membrane 18.71 10.99
Bra006343.1-P Field mustard plasma membrane 16.87 10.91
Bra009512.1-P Field mustard plasma membrane 17.79 10.9
Bra007207.1-P Field mustard plasma membrane 16.56 10.32
Bra006633.1-P Field mustard plasma membrane 15.34 9.8
Bra017305.1-P Field mustard plasma membrane 18.4 9.35
Bra012702.1-P Field mustard plasma membrane 14.42 9.31
Bra032705.1-P Field mustard plasma membrane 19.33 8.85
Bra002426.1-P Field mustard plasma membrane 19.02 6.4
Protein Annotations
EnsemblPlants:Bra033039.1EnsemblPlants:Bra033039.1-PEnsemblPlantsGene:Bra033039GO:GO:0005575GO:GO:0016020GO:GO:0016021
PANTHER:PTHR32044PANTHER:PTHR32044:SF11SEG:segTMHMM:TMhelixUniParc:UPI00025471FDUniProt:M4EW56
MapMan:35.1:::::
Description
AT3G28180 (E=1e-092) ATCSLC04, CSLC04, ATCSLC4, CSLC4 | ATCSLC04 (CELLULOSE-SYNTHASE LIKE C4); cellulose synthase/ transferase, transferring glycosyl groups
Coordinates
chrA02:-:21746349..21747329
Molecular Weight (calculated)
37226.2 Da
IEP (calculated)
10.066
GRAVY (calculated)
0.209
Length
326 amino acids
Sequence
(BLAST)
001: MPPNSVAVTM EKPDNFSLLE INGSDQSSLP DNKRKSISPK QFSWFILLKA HRVVSCLSWL FSSVRKRITF SSKHLNEEED PKSRGKQMYR FIKACLVISI
101: VALSIEIVAH LIFLFFLLRK LILPFYSFTL FCIILPLTMF IPEAELPLWI ICYVPIFISL LNILPSPKSF PFLIPYLLFE NTMSITKFNA MISGLFQLGS
201: AYEWVVTKKT GRSSESDLLA FSEKEEKLHR RNSESGLELL SKLKEKEMNL AEQETSKKSI GGLMRSNNKM KKRNMVFKKE VGLAFLLLTA AARSFLSAHG
301: LHFYFLLFQG LSFLVVGLDL IGEQIS
Best Arabidopsis Sequence Match ( AT2G24630.2 )
(BLAST)
001: MAPRFDFSDL WAKETRRGTP VVVKMENPNY SIVEVEEPDS AFQPMEKSRG KNAKQVTWVL LLKAHKAVGC LTWVATVFWS LLGSVKRRLS FTHPLGSERL
101: GRDGWLFSAI KLFLVASLAI LAFELVAYYR GWHYFKNPNL HIPTSKLEIQ SLLHLFYVGW LSLRADYIAP PIKALSKFCI VLFLVQSVDR LILCLGCLWI
201: KFKKIKPRID EEHFRNDDFE GSGSEYPMVL VQIPMCNERE VYEQSISAVC QLDWPKDRLL VQVLDDSDDE SIQELIRDEV TKWSQKGVNI IYRHRLVRTG
301: YKAGNLKSAM SCDYVEAYEF VAIFDADFQP NSDFLKLTVP HFKEKPELGL VQARWAFVNK DENLLTRLQN INLCFHFEVE QQVNGVFLNF FGFNGTAGVW
401: RIKALEESGG WLERTTVEDM DIAVRAHLHG WKFIYLNDVK VLCEVPESYE AYKKQQHRWH SGPMQLFRLC LRSILTSKIA MWKKANLILL FFLLRKLILP
501: FYSFTLFCVI LPITMFVPEA ELPIWVICYV PIFMSLLNIL PAPKSFPFIV PYLLFENTMS VTKFNAMVSG LFQLGSSYEW IVTKKAGRSS ESDLLALTDK
601: ESEKMPNQIL RGVSDSELLE ISQVEEQKKQ PVSVKKTNKI FHKELALAFL LLTAAVRSLL ASQGVHFYFL LFQGLTFLLV GLDLIGEQMS
Arabidopsis Description
CSLC8Probable xyloglucan glycosyltransferase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJA2]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.