Factsheet for PGSC0003DMT400026046

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
endoplasmic reticulum 2
plasma membrane 4
golgi 2
extracellular 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi, plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400026046	golgi
PGSC0003DMT400041333	golgi
PGSC0003DMT400063414	golgi
PGSC0003DMT400073000	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28180.1	PGSC0003DMT400041333	AT1G74380.1	22665445
AT3G28180.1	PGSC0003DMT400063414	AT1G74380.1	22665445
AT3G28180.1	PGSC0003DMT400073000	AT1G74380.1	22665445
AT3G28180.1	PGSC0003DMT400026046	AT3G28180.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g089640.2.1	Tomato	plasma membrane	99.39	99.39
CDY00138	Canola	cytosol, peroxisome, plasma membrane	56.42	80.74
CDY04011	Canola	cytosol, peroxisome, plasma membrane	56.12	80.31
KRG93391	Soybean	plasma membrane	76.91	76.21
KRH18597	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	76.91	76.21
VIT_14s0066g01730.t01	Wine grape	plasma membrane	77.22	76.05
CDX85189	Canola	plasma membrane	74.62	74.28
CDX86448	Canola	plasma membrane	74.46	74.12
AT3G28180.1	Thale cress	plasma membrane	75.23	73.11
PGSC0003DMT400053633	Potato	endoplasmic reticulum, plasma membrane, vacuole	19.57	72.73
CDY20029	Canola	plasma membrane	73.09	72.64
Bra039061.1-P	Field mustard	plasma membrane	74.46	72.04
Bra025323.1-P	Field mustard	plasma membrane	74.31	72.0
PGSC0003DMT400024646	Potato	golgi, peroxisome, plasma membrane	69.27	65.27
CDY47235	Canola	plasma membrane	32.26	64.72
Bra033039.1-P	Field mustard	plasma membrane	32.26	64.72
PGSC0003DMT400030125	Potato	plasma membrane	62.08	60.96
PGSC0003DMT400012668	Potato	plasma membrane	66.67	58.76
PGSC0003DMT400095504	Potato	plasma membrane	41.44	54.09
PGSC0003DMT400060105	Potato	cytosol	31.8	48.15
PGSC0003DMT400072644	Potato	plasma membrane	34.71	42.59
PGSC0003DMT400070323	Potato	plasma membrane, plastid	34.4	42.45
PGSC0003DMT400068221	Potato	plasma membrane	33.95	42.37
PGSC0003DMT400018425	Potato	plasma membrane	34.4	42.21
PGSC0003DMT400007050	Potato	mitochondrion	34.25	42.03
PGSC0003DMT400009922	Potato	plasma membrane	13.91	37.45

Protein Annotations

EntrezGene:102588069	MapMan:21.2.1.1.1	Gene3D:3.90.550.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768
GO:GO:0005794	GO:GO:0005802	GO:GO:0005886	GO:GO:0016020	GO:GO:0016021	GO:GO:0042803
InterPro:Glyco_trans_2-like	InterPro:IPR029044	UniProt:M1AMJ7	InterPro:Nucleotide-diphossugar_trans	PFAM:PF13632	EnsemblPlantsGene:PGSC0003DMG400010049
PGSC:PGSC0003DMG400010049	EnsemblPlants:PGSC0003DMT400026046	PANTHER:PTHR32044	PANTHER:PTHR32044:SF11	SUPFAM:SSF53448	TMHMM:TMhelix
UniParc:UPI0002953316	RefSeq:XP_006338294.1	SEG:seg	:	:	:

Description

Transferase, transferring glycosyl groups [Source:PGSC_GENE;Acc:PGSC0003DMG400010049]

Coordinates

chr2:+:45018470..45021749

Molecular Weight (calculated)

75504.5 Da

IEP (calculated)

8.530

GRAVY (calculated)

0.059

Length

654 amino acids

Sequence
(BLAST)

001: MAPSSVVVTM ENTKNISLVE VNDLDSPAFR DKNKAANPKR FTKVLLLKAQ RTLGCIPKTF ASVKKRIALS DEEPKYRGKL YRFIRAFLAI SVVALCIEIF
101: AYFNKWELNL VNPWEVQSIL QWTYMAWISF RADYIAPSLS KLTTFCIVLF LIQSIDRLVL CLGCFWMKFR KIKPIINEDA SDLEDGSYCP MVLVQIPMCN
201: EKEVFAQSIG AVCQLDWPKD RFLVQVLDDS DDEVLQQMIK NECLSWKEKG VNIIYRHRFI RTGYKAGNLK SAMTCDYVQD YEFVAIFDAD FQPNPDFLKL
301: TVPHFKGKPD VGLVQARWTF VNQDENLLTR LQNINLCFHF EVEQQVNGHY LNFFGFNGTA GVWRIKALEE SGGWLERTTV EDMDIAVRAH LYGWKFIYVN
401: DVRALCELPE SYEAYKKQQH RWHSGPMQLF RLCLPTILTS KISVWKKANM IFLFFLLRKL VLPFYSFTLF CIILPLTMFI PEAQLPAWVI CYVPIVMSIL
501: NILPAPKSFP FLMPYLLFEN TMSVTKFNAM VSGLFQLGSA YEWVVTKKTG RSSESDLLAF AEEESKKMNE EKISRRLSES GLELYGKLKE HEQEIPKKKK
601: ANKIYRKELA LAFLLLTAAA RSLLSAQGIH FYYLLFQGLT FLIVGLDLIG EQVS

Best Arabidopsis Sequence Match ( AT3G28180.1 )
(BLAST)

001: MAPNSVAVTM EKPDNFSLLE INGSDPSSFP DKRKSISPKQ FSWFLLLKAH RLISCLSWLV SSVKKRIAFS AKNINEEEDP KSRGKQMYRF IKACLVISII
101: ALSIEIVAHF KKWNLDLINR PSWEVYGLVE WSYMAWLSFR SDYIAPLVIS LSRFCTVLFL IQSLDRLVLC LGCFWIKFKK IEPKLTEESI DLEDPSSFPM
201: VLIQIPMCNE REVYEQSIGA ASQLDWPKDR ILIQVLDDSD DPNLQLLIKE EVSVWAEKGV NIIYRHRLIR TGYKAGNLKS AMTCDYVKDY EFVTIFDADF
301: TPNPDFLKKT VPHFKGNPEL GLVQARWSFV NKDENLLTRL QNINLCFHFE VEQQVNGVFL NFFGFNGTAG VWRIKALEES GGWLERTTVE DMDIAVRAHL
401: NGWKFIYLND VEVTCELPES YEAYKKQQHR WHSGPMQLFR LCLPSIIKSK ISVWKKANLI FLFFLLRKLI LPFYSFTLFC IILPLTMFIP EAELPLWIIC
501: YVPIFISLLN ILPSPKSFPF LVPYLLFENT MSITKFNAMI SGLFQFGSAY EWVVTKKTGR SSESDLLAFA EKEEKLHRRN SESGLELLSK LKEQETNLVG
601: QETVKKSLGG LMRPKNKKKT NMVFKKELGL AFLLLTAAAR SFLSAHGLHF YFLLFQGLSF LVVGLDLIGE QIS

Arabidopsis Description

CSLC4Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q6R3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.