Factsheet for PGSC0003DMT400063414

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
golgi 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400041333	golgi
PGSC0003DMT400063414	golgi
PGSC0003DMT400073000	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74380.1	PGSC0003DMT400041333	AT1G74380.1	22665445
AT1G74380.1	PGSC0003DMT400063414	AT1G74380.1	22665445
AT1G74380.1	PGSC0003DMT400073000	AT1G74380.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g115740.1.1	Tomato	plastid	97.11	97.11
PGSC0003DMT400041333	Potato	plastid	84.89	84.14
CDX68187	Canola	cytosol	39.56	79.82
CDX85826	Canola	cytosol	39.56	79.82
CDX73082	Canola	cytosol	39.33	79.73
CDX96540	Canola	cytosol	39.33	79.73
Bra008146.1-P	Field mustard	cytosol	39.11	78.92
VIT_17s0000g06590.t01	Wine grape	cytosol, golgi, plasma membrane, plastid	78.44	78.44
HORVU6Hr1G040960.1	Barley	cytosol	41.78	78.33
KRH56886	Soybean	endoplasmic reticulum	77.78	78.3
KRH03516	Soybean	mitochondrion	77.11	77.63
PGSC0003DMT400073000	Potato	cytosol	41.11	76.76
AT1G74380.1	Thale cress	plastid	76.89	75.71
Bra003804.1-P	Field mustard	plastid	76.22	75.05
Bra015915.1-P	Field mustard	plastid	76.0	75.0
AT5G07720.1	Thale cress	cytosol, plastid	75.11	73.96
CDX99024	Canola	cytosol, golgi, peroxisome, plastid	74.0	73.35
Bra009305.1-P	Field mustard	cytosol	73.78	72.97
CDX69995	Canola	cytosol	73.78	72.97
CDY49114	Canola	peroxisome	22.67	72.86
CDY19235	Canola	cytosol, golgi, plasma membrane, plastid	70.0	69.69
GSMUA_Achr10P...	Banana	cytosol	64.44	66.82
CDY26738	Canola	golgi, mitochondrion, plasma membrane, plastid	71.56	66.81
GSMUA_Achr3P22760_001	Banana	cytosol	65.78	64.49
Zm00001d016687_P001	Maize	plasma membrane	68.44	64.44
EES06903	Sorghum	plastid	68.67	64.38
Bra025677.1-P	Field mustard	golgi, mitochondrion, plasma membrane, plastid	71.56	64.02
Os02t0529600-01	Rice	golgi, peroxisome, plastid	67.78	63.54
TraesCS6D01G181200.1	Wheat	plastid	67.33	63.39
TraesCS6B01G221000.1	Wheat	plastid	67.11	63.18
TraesCS6A01G196600.1	Wheat	plastid	67.11	63.18
HORVU5Hr1G042000.1	Barley	golgi, mitochondrion	61.11	62.08
TraesCS5A01G129800.1	Wheat	mitochondrion	61.33	62.02
TraesCS5B01G128600.1	Wheat	golgi, mitochondrion	61.33	62.02
TraesCS5D01G137300.1	Wheat	golgi, mitochondrion	60.89	61.57
Os12t0149300-01	Rice	golgi	63.33	61.16
AT1G18690.4	Thale cress	golgi, plastid	69.56	61.01
GSMUA_Achr10P...	Banana	plastid	67.56	60.32
Zm00001d023399_P001	Maize	golgi, mitochondrion	58.44	57.68
Zm00001d023417_P001	Maize	golgi, mitochondrion	58.22	57.46
EES16639	Sorghum	golgi	59.33	57.42
GSMUA_Achr11P...	Banana	cytosol	64.67	57.28
PGSC0003DMT400058812	Potato	mitochondrion	55.56	53.88
PGSC0003DMT400023470	Potato	endoplasmic reticulum	26.0	43.33
EES15672	Sorghum	mitochondrion	49.56	43.3
Zm00001d023398_P001	Maize	mitochondrion	48.0	42.11
Zm00001d043041_P001	Maize	nucleus	26.67	40.68
PGSC0003DMT400085728	Potato	golgi, mitochondrion	37.11	37.7
PGSC0003DMT400055223	Potato	golgi	36.22	37.05
Zm00001d023418_P001	Maize	nucleus	48.44	21.14

Protein Annotations

EntrezGene:102578957	MapMan:21.2.1.1.2	Gene3D:3.90.550.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	InterPro:Glyco_trans_34	InterPro:IPR029044
UniProt:M1CAM8	InterPro:Nucleotide-diphossugar_trans	PFAM:PF05637	EnsemblPlantsGene:PGSC0003DMG400024667	PGSC:PGSC0003DMG400024667	EnsemblPlants:PGSC0003DMT400063414
PANTHER:PTHR31311	PANTHER:PTHR31311:SF4	TMHMM:TMhelix	UniParc:UPI0002948EE0	RefSeq:XP_015163216.1	SEG:seg

Description

Glycosyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400024667]

Coordinates

chr3:-:55569748..55572390

Molecular Weight (calculated)

51095.9 Da

IEP (calculated)

6.145

GRAVY (calculated)

-0.387

Length

450 amino acids

Sequence
(BLAST)

001: MGPDNSFTAQ KRAGGALPTT ATPNGGAGGG RASSILPRGR QIQRTFNNIK ITILCGFVTI LVLRGTIGFG NLASSGPDAE NLNLIEETNR IIAEIRSDKD
101: PDDFFSLNAT YSLGPKITAW DEDRKLWLQK NPEFPNFVQG KPRVMLVTGS PPIPCDNPIG DHYLLKAIKN KIDYCRIHGI EIVYNLAQLE MEMAGYWAKL
201: PLIRRLMLSH PEVEWIWWMD SDALFTDMVF EIPFSKYEDH NLVIHGYPDL LFDQKSWIAI NTGSFLIRNC QWSLDLLDAW APMGPKGPVR EEAGKVLTAN
301: LKGRPAFEAD DQSALIYLLT SQKDQWMDKV SIENSYYLHG YWAGLVDRYE EMIEKYHPGL GDERWPFVTH FVGCKPCGSY GDYPAERCLK NMERAFNFAD
401: NQVLNLYGFR HKGLLSPNIK RIRNETDNPL QYVDQLDVRH AKHESTETQS

Best Arabidopsis Sequence Match ( AT5G07720.1 )
(BLAST)

001: MGKEDGFRTQ KRVSTASSAA AGVLPTTMAS GGVRRPPPRG RQIQKTFNNV KMTILCGFVT ILVLRGTIGI NFGTSDADVV NQNIIEETNR LLAEIRSDSD
101: PTDSNEPPDS DLDLNMTYTL GPKITNWDQK RKLWLTQNPD FPSFINGKAK VLLLTGSPPK PCDNPIGDHY LLKSVKNKID YCRIHGIEIV YNMAHLDKEL
201: AGYWAKLPMI RRLMLSHPEI EWIWWMDSDA LFTDMVFEIP LSRYENHNLV IHGYPDLLFD QKSWIALNTG SFLFRNCQWS LDLLDAWAPM GPKGPIREEA
301: GKILTANLKG RPAFEADDQS ALIYLLLSQK ETWMEKVFVE NQYYLHGFWE GLVDKYEEMM EKYHPGLGDE RWPFITHFVG CKPCGSYADY AVERCLKSME
401: RAFNFADNQV LKLYGFGHRG LLSPKIKRIR NETTFPLKFV DRFDIRRTTP LKIEARS

Arabidopsis Description

XXT3Probable xyloglucan 6-xylosyltransferase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF80]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.