Factsheet for VIT_17s0000g06590.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, plastid, cytosol

Predictor Summary:

plastid 2
golgi 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g06590.t01	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74380.1	VIT_17s0000g06590.t01	AT1G74380.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008146.1-P	Field mustard	cytosol	43.11	87.0
CDX73082	Canola	cytosol	42.89	86.94
CDX96540	Canola	cytosol	42.89	86.94
CDX68187	Canola	cytosol	42.89	86.55
CDX85826	Canola	cytosol	42.89	86.55
KRH56886	Soybean	endoplasmic reticulum	81.78	82.33
KRH03516	Soybean	mitochondrion	81.56	82.1
PGSC0003DMT400073000	Potato	cytosol	43.56	81.33
AT1G74380.1	Thale cress	plastid	80.89	79.65
Bra015915.1-P	Field mustard	plastid	80.44	79.39
PGSC0003DMT400063414	Potato	plastid	78.44	78.44
Bra003804.1-P	Field mustard	plastid	79.56	78.34
HORVU6Hr1G040960.1	Barley	cytosol	41.78	78.33
Solyc03g115740.1.1	Tomato	plastid	78.22	78.22
PGSC0003DMT400041333	Potato	plastid	78.67	77.97
AT5G07720.1	Thale cress	cytosol, plastid	79.11	77.9
CDY49114	Canola	peroxisome	24.22	77.86
Bra009305.1-P	Field mustard	cytosol	77.33	76.48
CDX69995	Canola	cytosol	77.33	76.48
CDX99024	Canola	cytosol, golgi, peroxisome, plastid	77.11	76.43
CDY19235	Canola	cytosol, golgi, plasma membrane, plastid	73.11	72.79
Solyc05g013020.1.1	Tomato	golgi, mitochondrion, plastid	70.44	70.92
GSMUA_Achr10P...	Banana	cytosol	67.56	70.05
CDY26738	Canola	golgi, mitochondrion, plasma membrane, plastid	74.0	69.09
GSMUA_Achr3P22760_001	Banana	cytosol	68.22	66.88
Bra025677.1-P	Field mustard	golgi, mitochondrion, plasma membrane, plastid	73.56	65.81
Zm00001d016687_P001	Maize	plasma membrane	69.11	65.06
EES06903	Sorghum	plastid	69.33	65.0
Os02t0529600-01	Rice	golgi, peroxisome, plastid	68.67	64.38
AT1G18690.4	Thale cress	golgi, plastid	73.33	64.33
TraesCS5B01G128600.1	Wheat	golgi, mitochondrion	63.56	64.27
HORVU5Hr1G042000.1	Barley	golgi, mitochondrion	63.11	64.11
TraesCS5A01G129800.1	Wheat	mitochondrion	63.33	64.04
TraesCS6D01G181200.1	Wheat	plastid	67.56	63.6
TraesCS5D01G137300.1	Wheat	golgi, mitochondrion	62.89	63.6
TraesCS6B01G221000.1	Wheat	plastid	67.33	63.39
TraesCS6A01G196600.1	Wheat	plastid	67.33	63.39
GSMUA_Achr10P...	Banana	plastid	68.89	61.51
Os12t0149300-01	Rice	golgi	63.33	61.16
GSMUA_Achr11P...	Banana	cytosol	67.33	59.65
EES16639	Sorghum	golgi	59.56	57.63
Zm00001d023399_P001	Maize	golgi, mitochondrion	58.22	57.46
VIT_07s0005g00150.t01	Wine grape	mitochondrion	57.56	57.3
Zm00001d023417_P001	Maize	golgi, mitochondrion	58.0	57.24
VIT_05s0020g01530.t01	Wine grape	mitochondrion	55.78	53.86
EES15672	Sorghum	mitochondrion	51.11	44.66
Zm00001d023398_P001	Maize	mitochondrion	49.33	43.27
Zm00001d043041_P001	Maize	nucleus	26.22	40.0
VIT_00s0322g00030.t01	Wine grape	mitochondrion	27.56	36.15
Zm00001d023418_P001	Maize	nucleus	48.89	21.34

Protein Annotations

EntrezGene:100263916	wikigene:100263916	MapMan:21.2.1.1.2	Gene3D:3.90.550.10	EMBL:AM445355	ProteinID:CAN80739
ProteinID:CAN80739.1	ProteinID:CCB43067	ProteinID:CCB43067.1	ncoils:Coil	UniProt:F6GT58	EMBL:FN594950
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005768	GO:GO:0005794	GO:GO:0005802	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009969	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740
GO:GO:0016757	GO:GO:0016758	InterPro:Glyco_trans_34	InterPro:IPR029044	EntrezGene:LOC100263916	wikigene:LOC100263916
InterPro:Nucleotide-diphossugar_trans	PFAM:PF05637	PANTHER:PTHR31311	PANTHER:PTHR31311:SF4	TIGR:TC53470	TMHMM:TMhelix
UniParc:UPI00015C8A27	ArrayExpress:VIT_17s0000g06590	EnsemblPlantsGene:VIT_17s0000g06590	EnsemblPlants:VIT_17s0000g06590.t01	unigene:Vvi.7410	RefSeq:XP_002284667
RefSeq:XP_002284667.1	RefSeq:XP_019082002.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr17:+:7124307..7125962

Molecular Weight (calculated)

51306.4 Da

IEP (calculated)

6.648

GRAVY (calculated)

-0.414

Length

450 amino acids

Sequence
(BLAST)

001: MGLDNFTTQK RTGAGIPTTN GRPAGGRLSG LPRGRQIHKT FNNIKITILC GFVTILVLRG TIGVGNLGGS GGEVENQNLI EETNRILAEI RSDGDPTDPD
101: DPAESEINPN VTYTLGPKIT NWNEERKVWL DRNPEFPNFV NGKARILLVT GSPPNPCDNP IGDHYLLKSI KNKIDYCRIH GIEIVYNMAH LDKELAGYWA
201: KLPLIRRLML SHPEVEWIWW MDSDALFTDM VFEIPLSKYD NYNLVVHGYP DLMFNQKSWI ALNTGSFLFR NCQWSLDLLD AWAPMGPKGP IRDEAGKILT
301: ANLKGRPAFE ADDQSALIYL LISKKDEWMD KVFLENSYYL HGYWAGLVDR YEEMIEKYHP GLGDERWPFV THFVGCKPCG SYGDYPVERC LRSMERAFNF
401: ADNQVLKLYG FRHRGLLSPK IKRIRNETAT PLEFVDQFDI RRPEHGGHSL

Best Arabidopsis Sequence Match ( AT1G74380.1 )
(BLAST)

001: MGQDGSPAHK RPSGSGGGLP TTTLTNGGGR GGRGGLLPRG RQMQKTFNNI KITILCGFVT ILVLRGTIGV GNLGSSSADA VNQNIIEETN RILAEIRSDS
101: DPTDLDEPQE GDMNPNATYV LGPKITDWDS QRKVWLNQNP EFPSTVNGKA RILLLTGSPP KPCDNPIGDH YLLKSVKNKI DYCRLHGIEI VYNMAHLDKE
201: LAGYWAKLPM IRRLMLSHPE VEWIWWMDSD ALFTDILFQI PLARYQKHNL VIHGYPDLLF DQKSWIALNT GSFLLRNCQW SLDLLDAWAP MGPKGPIRDE
301: AGKVLTAYLK GRPAFEADDQ SALIYLLLSQ KDTWMEKVFV ENQYYLHGFW EGLVDRYEEM IEKYHPGLGD ERWPFVTHFV GCKPCGSYAD YAVERCLKSM
401: ERAFNFADNQ VLKLYGFSHR GLLSPKIKRI RNETVSPLEF VDKFDIRRTP VETKPQN

Arabidopsis Description

XXT5Probable xyloglucan 6-xylosyltransferase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA75]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.