Factsheet for Solyc05g013020.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, plastid

Predictor Summary:

plastid 4
mitochondrion 4
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g115740.1.1	golgi
Solyc05g013020.1.1	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74380.1	Solyc03g115740.1.1	AT1G74380.1	22665445
AT1G74380.1	Solyc05g013020.1.1	AT1G74380.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073000	Potato	cytosol	51.45	95.44
CDX96540	Canola	cytosol	38.93	78.38
CDX73082	Canola	cytosol	38.93	78.38
CDX85826	Canola	cytosol	38.7	77.58
CDX68187	Canola	cytosol	38.7	77.58
Bra008146.1-P	Field mustard	cytosol	38.26	76.68
HORVU6Hr1G040960.1	Barley	cytosol	38.48	71.67
VIT_17s0000g06590.t01	Wine grape	cytosol, golgi, plasma membrane, plastid	70.92	70.44
CDY49114	Canola	peroxisome	21.48	68.57
KRH03516	Soybean	mitochondrion	68.23	68.23
KRH56886	Soybean	endoplasmic reticulum	67.56	67.56
Solyc03g115740.1.1	Tomato	plastid	67.34	66.89
AT5G07720.1	Thale cress	cytosol, plastid	68.23	66.74
Bra003804.1-P	Field mustard	plastid	67.79	66.3
AT1G74380.1	Thale cress	plastid	67.79	66.3
Bra015915.1-P	Field mustard	plastid	67.56	66.23
CDX99024	Canola	cytosol, golgi, peroxisome, plastid	67.11	66.08
CDX69995	Canola	cytosol	67.11	65.93
Bra009305.1-P	Field mustard	cytosol	67.11	65.93
CDY19235	Canola	cytosol, golgi, plasma membrane, plastid	63.98	63.27
CDY26738	Canola	golgi, mitochondrion, plasma membrane, plastid	65.1	60.37
GSMUA_Achr10P...	Banana	cytosol	58.61	60.37
TraesCS5B01G128600.1	Wheat	golgi, mitochondrion	57.94	58.2
HORVU5Hr1G042000.1	Barley	golgi, mitochondrion	57.49	58.01
TraesCS5D01G137300.1	Wheat	golgi, mitochondrion	57.72	57.98
TraesCS5A01G129800.1	Wheat	mitochondrion	57.72	57.98
GSMUA_Achr3P22760_001	Banana	cytosol	59.51	57.95
Bra025677.1-P	Field mustard	golgi, mitochondrion, plasma membrane, plastid	64.88	57.65
Os02t0529600-01	Rice	golgi, peroxisome, plastid	61.52	57.29
Zm00001d016687_P001	Maize	plasma membrane	61.07	57.11
EES06903	Sorghum	plastid	61.3	57.08
TraesCS6A01G196600.1	Wheat	plastid	60.18	56.28
TraesCS6D01G181200.1	Wheat	plastid	60.18	56.28
TraesCS6B01G221000.1	Wheat	plastid	59.96	56.07
AT1G18690.4	Thale cress	golgi, plastid	63.53	55.36
Os12t0149300-01	Rice	golgi	56.6	54.29
GSMUA_Achr10P...	Banana	plastid	60.4	53.57
GSMUA_Achr11P...	Banana	cytosol	59.06	51.97
Zm00001d023399_P001	Maize	golgi, mitochondrion	52.35	51.32
EES16639	Sorghum	golgi	53.24	51.18
Zm00001d023417_P001	Maize	golgi, mitochondrion	51.9	50.88
EES15672	Sorghum	mitochondrion	46.76	40.58
Zm00001d023398_P001	Maize	mitochondrion	45.19	39.38
Solyc03g043920.2.1	Tomato	golgi	34.0	36.72
Zm00001d043041_P001	Maize	nucleus	24.16	36.61
Solyc02g092210.1.1	Tomato	golgi, mitochondrion	36.24	36.57
Solyc01g067930.2.1	Tomato	mitochondrion	16.78	35.71
Zm00001d023418_P001	Maize	nucleus	45.41	19.69

Protein Annotations

MapMan:21.2.1.1.2	Gene3D:3.90.550.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0005802	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009969	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	GO:GO:0016758	InterPro:Glyco_trans_34	InterPro:IPR029044
UniProt:K4BY23	InterPro:Nucleotide-diphossugar_trans	PFAM:PF05637	PANTHER:PTHR31311	PANTHER:PTHR31311:SF4	EnsemblPlantsGene:Solyc05g013020.1
EnsemblPlants:Solyc05g013020.1.1	TMHMM:TMhelix	UniParc:UPI0002765ABF	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:-:6127918..6129396

Molecular Weight (calculated)

51637.6 Da

IEP (calculated)

8.734

GRAVY (calculated)

-0.433

Length

447 amino acids

Sequence
(BLAST)

001: MVQFTALKRL TSAGASAALP TSSNDGAGAR SVSHRRRVAN SFINIRLTIL CGIVTILVLR GTIGLNNFSS NSPSLDQNQK LVEETNRIIA QIRYDDNDND
101: DDDNFEYPQN SSYSLGPKIN NWNSTRKTWL HENPRFPSYI NGKPRVLLVT GSPPSPCDNS IGDYYLLKSI KNKIDYCRIH NIEIVYNMAH FDKKLSGYWS
201: KLPLIRKLMI SHPEIEWIWW MDSDAMFTDM VFEIPLSKYS EKNLIIHGYP ELLNEKSWVA LNTGSFLLRN CQWSLDLLDS WAPMGPKGKI RDDAGKILSA
301: NLKGRPNFEA DDQSALIYML ILRNNKWMEK VFVENSYYLH GYWAGLVDRY EEMIQKYHPG FGDERWPFVT HFVGCKPCGS YGDYPVEKCL KSMERAFNFA
401: DNQVLKLYGF KHRGLSSPNV KRIRNETFRP LEFVNDFDIR HSTLFRF

Best Arabidopsis Sequence Match ( AT5G07720.1 )
(BLAST)

001: MGKEDGFRTQ KRVSTASSAA AGVLPTTMAS GGVRRPPPRG RQIQKTFNNV KMTILCGFVT ILVLRGTIGI NFGTSDADVV NQNIIEETNR LLAEIRSDSD
101: PTDSNEPPDS DLDLNMTYTL GPKITNWDQK RKLWLTQNPD FPSFINGKAK VLLLTGSPPK PCDNPIGDHY LLKSVKNKID YCRIHGIEIV YNMAHLDKEL
201: AGYWAKLPMI RRLMLSHPEI EWIWWMDSDA LFTDMVFEIP LSRYENHNLV IHGYPDLLFD QKSWIALNTG SFLFRNCQWS LDLLDAWAPM GPKGPIREEA
301: GKILTANLKG RPAFEADDQS ALIYLLLSQK ETWMEKVFVE NQYYLHGFWE GLVDKYEEMM EKYHPGLGDE RWPFITHFVG CKPCGSYADY AVERCLKSME
401: RAFNFADNQV LKLYGFGHRG LLSPKIKRIR NETTFPLKFV DRFDIRRTTP LKIEARS

Arabidopsis Description

XXT3Probable xyloglucan 6-xylosyltransferase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF80]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.