Factsheet for Solyc01g067930.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
golgi 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g067930.2.1	golgi, golgi
Solyc03g115740.1.1	golgi, golgi
Solyc05g013020.1.1	golgi, golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62720.1	Solyc03g115740.1.1	AT1G74380.1	22665445
AT3G62720.1	Solyc05g013020.1.1	AT1G74380.1	22665445
AT3G62720.1	Solyc01g067930.2.1	AT4G02500.1	22665445
AT4G02500.1	Solyc03g115740.1.1	AT1G74380.1	22665445
AT4G02500.1	Solyc05g013020.1.1	AT1G74380.1	22665445
AT4G02500.1	Solyc01g067930.2.1	AT4G02500.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11441	Canola	mitochondrion	54.76	60.85
KRH12052	Soybean	mitochondrion	63.33	49.81
KRH68171	Soybean	golgi, mitochondrion	57.14	49.79
PGSC0003DMT400058812	Potato	mitochondrion	96.19	43.53
CDY70090	Canola	mitochondrion	66.19	39.27
VIT_07s0005g00150.t01	Wine grape	mitochondrion	67.62	31.42
VIT_05s0020g01530.t01	Wine grape	mitochondrion	68.57	30.9
Bra018545.1-P	Field mustard	mitochondrion	66.67	30.3
AT4G02500.1	Thale cress	mitochondrion	66.19	30.15
Bra036262.1-P	Field mustard	mitochondrion	66.19	30.09
Bra000877.1-P	Field mustard	mitochondrion	66.19	30.02
CDX90935	Canola	mitochondrion	63.33	29.62
Zm00001d035801_P001	Maize	mitochondrion, nucleus, plastid	27.14	29.53
KRH37112	Soybean	golgi, mitochondrion	62.86	29.33
AT3G62720.1	Thale cress	mitochondrion	63.33	28.91
CDY22055	Canola	mitochondrion	61.43	28.73
Bra007696.1-P	Field mustard	mitochondrion	62.38	28.73
Bra014396.1-P	Field mustard	mitochondrion	61.9	28.32
CDY70418	Canola	golgi, mitochondrion	61.9	28.26
CDX93965	Canola	mitochondrion	60.48	27.73
KRG96428	Soybean	mitochondrion	58.1	26.81
CDY50378	Canola	cytosol	59.05	26.44
GSMUA_Achr1P24760_001	Banana	mitochondrion	54.29	26.39
CDX97271	Canola	mitochondrion	33.33	26.02
CDY65940	Canola	mitochondrion	31.9	25.19
EER92398	Sorghum	golgi	51.9	24.44
Zm00001d028811_P001	Maize	plasma membrane	51.9	24.38
Zm00001d047694_P001	Maize	golgi	51.9	24.33
HORVU4Hr1G054910.1	Barley	golgi, mitochondrion	51.9	24.11
TraesCS4D01G189500.1	Wheat	golgi, mitochondrion	50.95	23.73
TraesCS4B01G188100.1	Wheat	golgi, mitochondrion	50.95	23.73
TraesCS4A01G116100.2	Wheat	golgi, mitochondrion	50.95	23.67
TraesCS1B01G115300.1	Wheat	golgi, mitochondrion	50.95	22.91
GSMUA_Achr8P22410_001	Banana	golgi, mitochondrion	45.24	22.14
Zm00001d025851_P001	Maize	cytosol	35.24	20.44
Os03t0300000-01	Rice	cytosol	32.86	19.83
Zm00001d051264_P001	Maize	mitochondrion, plastid	36.67	19.4
Solyc03g115740.1.1	Tomato	plastid	39.05	18.22
CDY18017	Canola	mitochondrion	27.62	17.31
Solyc05g013020.1.1	Tomato	golgi, mitochondrion, plastid	35.71	16.78
Solyc03g043920.2.1	Tomato	golgi	22.86	11.59
Solyc02g092210.1.1	Tomato	golgi, mitochondrion	22.38	10.61
CDX76657	Canola	mitochondrion	4.29	4.69
Zm00001d026023_P001	Maize	endoplasmic reticulum, golgi	3.33	2.64
CDY11442	Canola	cytosol, extracellular, mitochondrion, plastid	0.95	2.35
CDY11443	Canola	cytosol	0.0	0.0

Protein Annotations

MapMan:21.2.1.1.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0005802	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009969	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0016757	GO:GO:0016758	GO:GO:0033843	GO:GO:0035252	InterPro:Glyco_trans_34
UniProt:K4AX41	PFAM:PF05637	PANTHER:PTHR31311	PANTHER:PTHR31311:SF6	EnsemblPlantsGene:Solyc01g067930.2	EnsemblPlants:Solyc01g067930.2.1
TMHMM:TMhelix	UniParc:UPI0002763369	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:+:76941648..76943047

Molecular Weight (calculated)

23952.6 Da

IEP (calculated)

9.080

GRAVY (calculated)

-0.517

Length

210 amino acids

Sequence
(BLAST)

001: MLDRFLSARR AWQVRRIMRN GKLTFLCLFL TVIVLRGNLG AGRFGTPGQD LKEIRETFSY YRKRVEPRRV LEEAQQVSSS STVSDGGASS SDSNNYATFD
101: LKKILVDEDD GEPEFKRDPN QPYALGPKII DWDEQRGEWL KKNPNFPNFV GTNKPRVLLV TGSSPKPCEN PVGDHYLLKS IKNKIDYCRL HGIEIFYNMA
201: LLDEAFAITS

Best Arabidopsis Sequence Match ( AT3G62720.1 )
(BLAST)

001: MIEKCIGAHR FRRLQRFMRQ GKVTILCLVL TVIVLRGTIG AGKFGTPEKD IEEIREHFFY TRKRGEPHRV LVEVSSKTTS SEDGGNGGNS YETFDINKLF
101: VDEGDEEKSR DRTNKPYSLG PKISDWDEQR RDWLKQNPSF PNFVAPNKPR VLLVTGSAPK PCENPVGDHY LLKSIKNKID YCRIHGIEIF YNMALLDAEM
201: AGFWAKLPLI RKLLLSHPEI EFLWWMDSDA MFTDMVFELP WERYKDYNLV MHGWNEMVYD QKNWIGLNTG SFLLRNSQWS LDLLDAWAPM GPKGKIREEA
301: GKVLTRELKD RPAFEADDQS AMVYLLATER EKWGGKVYLE SGYYLHGYWG ILVDRYEEMI ENHKPGFGDH RWPLVTHFVG CKPCGKFGDY PVERCLRQMD
401: RAFNFGDNQI LQMYGFTHKS LGSRRVKPTR NQTDRPLDAK DEFGLLHPPF KAAKLSTTTT

Arabidopsis Description

XXT1XXT1 [Source:UniProtKB/TrEMBL;Acc:A0A178VEJ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.