CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68187	golgi
CDX73082	golgi
CDX85826	golgi
CDX90935	golgi
CDX96540	golgi
CDX97271	golgi
CDY18017	golgi
CDY22055	golgi
CDY49114	golgi
CDY50378	golgi
CDY65940	golgi
CDY70090	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62720.1	CDX68187	AT1G74380.1	22665445
AT3G62720.1	CDX73082	AT1G74380.1	22665445
AT3G62720.1	CDX85826	AT1G74380.1	22665445
AT3G62720.1	CDX96540	AT1G74380.1	22665445
AT3G62720.1	CDY49114	AT1G74380.1	22665445
AT3G62720.1	CDX90935	AT4G02500.1	22665445
AT3G62720.1	CDX97271	AT4G02500.1	22665445
AT3G62720.1	CDY18017	AT4G02500.1	22665445
AT3G62720.1	CDY22055	AT4G02500.1	22665445
AT3G62720.1	CDY50378	AT4G02500.1	22665445
AT3G62720.1	CDY65940	AT4G02500.1	22665445
AT3G62720.1	CDY70090	AT4G02500.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76657	Canola	mitochondrion	98.31	30.21
Zm00001d026023_P001	Maize	endoplasmic reticulum, golgi	79.66	17.74
Os03t0300000-01	Rice	cytosol	77.97	13.22
CDY18017	Canola	mitochondrion	74.58	13.13
Zm00001d025851_P001	Maize	cytosol	76.27	12.43
AT3G62720.1	Thale cress	mitochondrion	94.92	12.17
Zm00001d051264_P001	Maize	mitochondrion, plastid	77.97	11.59
CDX93965	Canola	mitochondrion	88.14	11.35
CDX68187	Canola	cytosol	42.37	11.21
CDX85826	Canola	cytosol	42.37	11.21
CDX73082	Canola	cytosol	40.68	10.81
CDX96540	Canola	cytosol	40.68	10.81
Zm00001d028811_P001	Maize	plasma membrane	81.36	10.74
Bra014396.1-P	Field mustard	mitochondrion	83.05	10.68
EER92398	Sorghum	golgi	79.66	10.54
Zm00001d047694_P001	Maize	golgi	79.66	10.49
GSMUA_Achr8P22410_001	Banana	golgi, mitochondrion	76.27	10.49
CDY70418	Canola	golgi, mitochondrion	81.36	10.43
GSMUA_Achr1P24760_001	Banana	mitochondrion	76.27	10.42
VIT_07s0005g00150.t01	Wine grape	mitochondrion	77.97	10.18
PGSC0003DMT400058812	Potato	mitochondrion	79.66	10.13
CDY22055	Canola	mitochondrion	76.27	10.02
KRH37112	Soybean	golgi, mitochondrion	76.27	10.0
VIT_05s0020g01530.t01	Wine grape	mitochondrion	77.97	9.87
CDX90935	Canola	mitochondrion	74.58	9.8
TraesCS4B01G188100.1	Wheat	golgi, mitochondrion	74.58	9.76
CDY50378	Canola	cytosol	76.27	9.59
TraesCS4D01G189500.1	Wheat	golgi, mitochondrion	72.88	9.53
HORVU4Hr1G054910.1	Barley	golgi, mitochondrion	72.88	9.51
KRG96428	Soybean	mitochondrion	72.88	9.45
TraesCS4A01G116100.2	Wheat	golgi, mitochondrion	71.19	9.29
TraesCS1B01G115300.1	Wheat	golgi, mitochondrion	72.88	9.21
CDY19235	Canola	cytosol, golgi, plasma membrane, plastid	42.37	5.53
CDY26738	Canola	golgi, mitochondrion, plasma membrane, plastid	44.07	5.39
CDX99024	Canola	cytosol, golgi, peroxisome, plastid	37.29	4.85
CDX69995	Canola	cytosol	37.29	4.84
CDX72649	Canola	golgi	25.42	3.42
CDY29577	Canola	golgi	25.42	3.42
CDY49440	Canola	golgi	25.42	3.35
CDX76887	Canola	golgi, plastid	25.42	3.35
CDY49114	Canola	peroxisome	3.39	1.43
CDY11442	Canola	cytosol, extracellular, mitochondrion, plastid	1.69	1.18
CDY11441	Canola	mitochondrion	3.39	1.06
Solyc01g067930.2.1	Tomato	mitochondrion	0.0	0.0
CDX97271	Canola	mitochondrion	0.0	0.0
KRH68171	Soybean	golgi, mitochondrion	0.0	0.0
KRH12052	Soybean	mitochondrion	0.0	0.0
CDY70090	Canola	mitochondrion	0.0	0.0
Zm00001d035801_P001	Maize	mitochondrion, nucleus, plastid	0.0	0.0
CDY65940	Canola	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:CDY11443	EnsemblPlantsGene:GSBRNA2T00049511001	PANTHER:PTHR31311	PANTHER:PTHR31311:SF6	ProteinID:CDY11443	ProteinID:CDY11443.1
UniParc:UPI0004EE07F2	UniProt:A0A078FH67	MapMan:35.1	:	:	:

Description

BnaA09g40090DBnaA09g40090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FH67]

Coordinates

chrLK032011:+:395772..395951

Molecular Weight (calculated)

6797.1 Da

IEP (calculated)

10.676

GRAVY (calculated)

-0.764

Length

59 amino acids

Sequence
(BLAST)

1: MDRAFNFGDN QILQMYGFTH KSLGSRRVKP TRNQTDRPLD AKDEFGLLHP SFKAVKLTT

Best Arabidopsis Sequence Match ( AT3G62720.1 )
(BLAST)

001: MIEKCIGAHR FRRLQRFMRQ GKVTILCLVL TVIVLRGTIG AGKFGTPEKD IEEIREHFFY TRKRGEPHRV LVEVSSKTTS SEDGGNGGNS YETFDINKLF
101: VDEGDEEKSR DRTNKPYSLG PKISDWDEQR RDWLKQNPSF PNFVAPNKPR VLLVTGSAPK PCENPVGDHY LLKSIKNKID YCRIHGIEIF YNMALLDAEM
201: AGFWAKLPLI RKLLLSHPEI EFLWWMDSDA MFTDMVFELP WERYKDYNLV MHGWNEMVYD QKNWIGLNTG SFLLRNSQWS LDLLDAWAPM GPKGKIREEA
301: GKVLTRELKD RPAFEADDQS AMVYLLATER EKWGGKVYLE SGYYLHGYWG ILVDRYEEMI ENHKPGFGDH RWPLVTHFVG CKPCGKFGDY PVERCLRQMD
401: RAFNFGDNQI LQMYGFTHKS LGSRRVKPTR NQTDRPLDAK DEFGLLHPPF KAAKLSTTTT

Arabidopsis Description

XXT1XXT1 [Source:UniProtKB/TrEMBL;Acc:A0A178VEJ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.