CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi

Predictor Summary:

plastid 2
mitochondrion 4
golgi 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96428	golgi, golgi
KRH03516	golgi, golgi
KRH12052	golgi, golgi
KRH37112	golgi, golgi
KRH56886	golgi, golgi
KRH68171	golgi, golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62720.1	KRH03516	AT1G74380.1	22665445
AT3G62720.1	KRH56886	AT1G74380.1	22665445
AT3G62720.1	KRG96428	AT4G02500.1	22665445
AT3G62720.1	KRH12052	AT4G02500.1	22665445
AT3G62720.1	KRH37112	AT4G02500.1	22665445
AT3G62720.1	KRH68171	AT4G02500.1	22665445
AT4G02500.1	KRH03516	AT1G74380.1	22665445
AT4G02500.1	KRH56886	AT1G74380.1	22665445
AT4G02500.1	KRG96428	AT4G02500.1	22665445
AT4G02500.1	KRH12052	AT4G02500.1	22665445
AT4G02500.1	KRH37112	AT4G02500.1	22665445
AT4G02500.1	KRH68171	AT4G02500.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11441	Canola	mitochondrion	47.3	60.32
KRH12052	Soybean	mitochondrion	65.98	59.55
Solyc01g067930.2.1	Tomato	mitochondrion	49.79	57.14
KRG96428	Soybean	mitochondrion	90.46	47.91
CDY70090	Canola	mitochondrion	69.29	47.18
VIT_07s0005g00150.t01	Wine grape	mitochondrion	73.44	39.16
CDX90935	Canola	mitochondrion	68.46	36.75
Bra018545.1-P	Field mustard	mitochondrion	70.12	36.58
Bra036262.1-P	Field mustard	mitochondrion	70.12	36.58
Bra000877.1-P	Field mustard	mitochondrion	70.12	36.5
KRH37112	Soybean	golgi, mitochondrion	68.05	36.44
CDY22055	Canola	mitochondrion	67.63	36.3
AT4G02500.1	Thale cress	mitochondrion	69.29	36.23
Bra007696.1-P	Field mustard	mitochondrion	68.46	36.18
CDY70418	Canola	golgi, mitochondrion	68.05	35.65
AT3G62720.1	Thale cress	mitochondrion	67.63	35.43
Bra014396.1-P	Field mustard	mitochondrion	67.22	35.29
CDX93965	Canola	mitochondrion	66.39	34.93
PGSC0003DMT400058812	Potato	mitochondrion	65.15	33.84
CDY50378	Canola	cytosol	64.73	33.26
GSMUA_Achr1P24760_001	Banana	mitochondrion	59.34	33.1
HORVU4Hr1G054910.1	Barley	golgi, mitochondrion	58.09	30.97
TraesCS4B01G188100.1	Wheat	golgi, mitochondrion	57.68	30.82
Zm00001d047694_P001	Maize	golgi	57.26	30.8
TraesCS4A01G116100.2	Wheat	golgi, mitochondrion	57.68	30.75
Zm00001d028811_P001	Maize	plasma membrane	56.85	30.65
TraesCS4D01G189500.1	Wheat	golgi, mitochondrion	57.26	30.6
EER92398	Sorghum	golgi	56.43	30.49
GSMUA_Achr8P22410_001	Banana	golgi, mitochondrion	53.53	30.07
CDX97271	Canola	mitochondrion	33.2	29.74
TraesCS1B01G115300.1	Wheat	golgi, mitochondrion	57.26	29.55
Zm00001d035801_P001	Maize	mitochondrion, nucleus, plastid	22.82	28.5
Zm00001d051264_P001	Maize	mitochondrion, plastid	45.23	27.46
CDY65940	Canola	mitochondrion	30.29	27.44
Os03t0300000-01	Rice	cytosol	39.42	27.3
Zm00001d025851_P001	Maize	cytosol	37.34	24.86
KRH56886	Soybean	endoplasmic reticulum	45.64	24.61
KRH03516	Soybean	mitochondrion	45.64	24.61
CDY18017	Canola	mitochondrion	26.97	19.4
KRH28334	Soybean	plastid	30.71	16.37
KRH77153	Soybean	golgi, nucleus, peroxisome, plastid	30.29	16.26
KRH58138	Soybean	golgi	28.22	15.89
Zm00001d026023_P001	Maize	endoplasmic reticulum, golgi	16.18	14.72
CDX76657	Canola	mitochondrion	7.47	9.38
CDY11442	Canola	cytosol, extracellular, mitochondrion, plastid	0.41	1.18
CDY11443	Canola	cytosol	0.0	0.0

Protein Annotations

MapMan:21.2.1.1.2	Gene3D:3.90.550.10	UniProt:A0A0R0KTK1	EMBL:ACUP02002102	EnsemblPlantsGene:GLYMA_03G213400	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016757
InterPro:Glyco_trans_34	InterPro:IPR029044	EnsemblPlants:KRH68171	ProteinID:KRH68171	ProteinID:KRH68171.1	InterPro:Nucleotide-diphossugar_trans
PFAM:PF05637	PANTHER:PTHR31311	PANTHER:PTHR31311:SF6	TMHMM:TMhelix	UniParc:UPI0006ED4D1F	SEG:seg

Description

hypothetical protein

Coordinates

chr3:-:41864828..41865551

Molecular Weight (calculated)

27971.8 Da

IEP (calculated)

9.005

GRAVY (calculated)

-0.382

Length

241 amino acids

Sequence
(BLAST)

001: MLEKCLGVQR ARRFHRALRH CKVTILCLVL TIIVLRGTIG AGKFGTPEQD FVDIRNRFYS LKLPEPHRLL AELHSTTTPF QSSTSTNNYN AFDINTILVD
101: EKEDENLENF NPHQPYRLGP KISNWNEQRS RWLRENPNFS NFLRPNKPRV LLVTGSSPKP CENPVGDYYL LKAIKNKIDY CRLHGIEAFY NMALLDAEIA
201: GFWAKLPLIR KLLLSHPEVE FLWWMDSDAM FTDMSSSCRG R

Best Arabidopsis Sequence Match ( AT1G74380.1 )
(BLAST)

001: MGQDGSPAHK RPSGSGGGLP TTTLTNGGGR GGRGGLLPRG RQMQKTFNNI KITILCGFVT ILVLRGTIGV GNLGSSSADA VNQNIIEETN RILAEIRSDS
101: DPTDLDEPQE GDMNPNATYV LGPKITDWDS QRKVWLNQNP EFPSTVNGKA RILLLTGSPP KPCDNPIGDH YLLKSVKNKI DYCRLHGIEI VYNMAHLDKE
201: LAGYWAKLPM IRRLMLSHPE VEWIWWMDSD ALFTDILFQI PLARYQKHNL VIHGYPDLLF DQKSWIALNT GSFLLRNCQW SLDLLDAWAP MGPKGPIRDE
301: AGKVLTAYLK GRPAFEADDQ SALIYLLLSQ KDTWMEKVFV ENQYYLHGFW EGLVDRYEEM IEKYHPGLGD ERWPFVTHFV GCKPCGSYAD YAVERCLKSM
401: ERAFNFADNQ VLKLYGFSHR GLLSPKIKRI RNETVSPLEF VDKFDIRRTP VETKPQN

Arabidopsis Description

XXT5Probable xyloglucan 6-xylosyltransferase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA75]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.