CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi

Predictor Summary:

plastid 1
mitochondrion 4
golgi 2
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68187	golgi
CDX73082	golgi
CDX85826	golgi
CDX90935	golgi
CDX96540	golgi
CDX97271	golgi
CDY18017	golgi
CDY22055	golgi
CDY49114	golgi
CDY50378	golgi
CDY65940	golgi
CDY70090	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62720.1	CDX68187	AT1G74380.1	22665445
AT3G62720.1	CDX73082	AT1G74380.1	22665445
AT3G62720.1	CDX85826	AT1G74380.1	22665445
AT3G62720.1	CDX96540	AT1G74380.1	22665445
AT3G62720.1	CDY49114	AT1G74380.1	22665445
AT3G62720.1	CDX90935	AT4G02500.1	22665445
AT3G62720.1	CDX97271	AT4G02500.1	22665445
AT3G62720.1	CDY18017	AT4G02500.1	22665445
AT3G62720.1	CDY22055	AT4G02500.1	22665445
AT3G62720.1	CDY50378	AT4G02500.1	22665445
AT3G62720.1	CDY65940	AT4G02500.1	22665445
AT3G62720.1	CDY70090	AT4G02500.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014396.1-P	Field mustard	mitochondrion	98.91	99.13
CDX93965	Canola	mitochondrion	95.87	96.29
AT3G62720.1	Thale cress	mitochondrion	88.91	88.91
CDY11441	Canola	mitochondrion	34.57	84.13
CDY11443	Canola	cytosol	10.43	81.36
CDX90935	Canola	mitochondrion	78.7	80.62
CDX76657	Canola	mitochondrion	33.48	80.21
CDY22055	Canola	mitochondrion	78.26	80.18
Zm00001d026023_P001	Maize	endoplasmic reticulum, golgi	46.09	80.0
Os03t0300000-01	Rice	cytosol	60.43	79.89
CDY70090	Canola	mitochondrion	61.09	79.38
VIT_07s0005g00150.t01	Wine grape	mitochondrion	77.61	78.98
KRH37112	Soybean	golgi, mitochondrion	74.78	76.44
CDY18017	Canola	mitochondrion	55.65	76.42
KRG96428	Soybean	mitochondrion	75.43	76.26
GSMUA_Achr1P24760_001	Banana	mitochondrion	71.3	75.93
CDY50378	Canola	cytosol	77.39	75.91
VIT_05s0020g01530.t01	Wine grape	mitochondrion	76.74	75.75
CDX97271	Canola	mitochondrion	44.13	75.46
PGSC0003DMT400058812	Potato	mitochondrion	74.78	74.14
CDY65940	Canola	mitochondrion	42.17	72.93
GSMUA_Achr8P22410_001	Banana	golgi, mitochondrion	67.17	72.03
Zm00001d025851_P001	Maize	cytosol	56.3	71.55
KRH12052	Soybean	mitochondrion	41.3	71.16
Zm00001d028811_P001	Maize	plasma membrane	68.91	70.92
EER92398	Sorghum	golgi	68.48	70.63
Zm00001d047694_P001	Maize	golgi	68.7	70.54
Zm00001d051264_P001	Maize	mitochondrion, plastid	60.43	70.03
HORVU4Hr1G054910.1	Barley	golgi, mitochondrion	67.17	68.36
TraesCS4D01G189500.1	Wheat	golgi, mitochondrion	66.74	68.07
TraesCS4B01G188100.1	Wheat	golgi, mitochondrion	66.74	68.07
KRH68171	Soybean	golgi, mitochondrion	35.65	68.05
TraesCS4A01G116100.2	Wheat	golgi, mitochondrion	66.74	67.92
TraesCS1B01G115300.1	Wheat	golgi, mitochondrion	66.74	65.74
CDY49114	Canola	peroxisome	19.78	65.0
CDX73082	Canola	cytosol	30.43	63.06
CDX96540	Canola	cytosol	30.43	63.06
CDX85826	Canola	cytosol	30.22	62.33
CDX68187	Canola	cytosol	30.22	62.33
Solyc01g067930.2.1	Tomato	mitochondrion	28.26	61.9
Zm00001d035801_P001	Maize	mitochondrion, nucleus, plastid	25.0	59.59
CDY11442	Canola	cytosol, extracellular, mitochondrion, plastid	10.65	57.65
CDX99024	Canola	cytosol, golgi, peroxisome, plastid	53.48	54.19
CDX69995	Canola	cytosol	52.83	53.41
CDY19235	Canola	cytosol, golgi, plasma membrane, plastid	49.78	50.66
CDY26738	Canola	golgi, mitochondrion, plasma membrane, plastid	49.78	47.51
CDX72649	Canola	golgi	32.83	34.47
CDY29577	Canola	golgi	32.83	34.47
CDY49440	Canola	golgi	32.83	33.71
CDX76887	Canola	golgi, plastid	32.61	33.48

Protein Annotations

MapMan:21.2.1.1.2	Gene3D:3.90.550.10	GO:A0A078JS48	UniProt:A0A078JS48	EnsemblPlants:CDY70418	ProteinID:CDY70418
ProteinID:CDY70418.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0016757	EnsemblPlantsGene:GSBRNA2T00003189001	InterPro:Glyco_trans_34	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans
PFAM:PF05637	PANTHER:PTHR31311	PANTHER:PTHR31311:SF6	TMHMM:TMhelix	UniParc:UPI0004EDF2CA	SEG:seg

Description

BnaA04g27220DBnaA04g27220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JS48]

Coordinates

chrLK042045:-:654..2036

Molecular Weight (calculated)

53048.4 Da

IEP (calculated)

7.840

GRAVY (calculated)

-0.481

Length

460 amino acids

Sequence
(BLAST)

001: MIEKCIGTQR LRRLQRVWRQ GKVTLLCLVL TVVVLRGTIG AGKFGTPEQD IEEIREHFFY SRKRAETHRV LVELSSSSSK TTSSSAAGNS NNNNNYETFD
101: FKKIFADEGD EEKALDRSKP YSLGPKISDW DEQRIDWLKQ NPSFPNFVAA NKPRVLLVTG SAPKPCENPV GDHYLLKSIK NKIDYCRIHG IEIFYNMALL
201: DAEMAGFWAK LPLIRKLLLS HPEVEFLWWM DSDAMFTDMV FELPWERYED YNLVMHGWKE MVYDQKSWIG LNTGSFLIRN SQWALDLLDA WAPMGPKGRI
301: REEAGKVLTR ELKDRPAFEA DDQSAMVYLL ATEREKWGGK VYLESGYYLH GYWGILVDRY EEMIENHKPG FGDHRWPLVT HFVGCKPCGK FGDYPVERCL
401: RQMDRAFNFG DNQILQVYGF THKSLGSRSV KPTRSQTGRP VDVKDEFGLL HPPFKAATST

Best Arabidopsis Sequence Match ( AT3G62720.1 )
(BLAST)

001: MIEKCIGAHR FRRLQRFMRQ GKVTILCLVL TVIVLRGTIG AGKFGTPEKD IEEIREHFFY TRKRGEPHRV LVEVSSKTTS SEDGGNGGNS YETFDINKLF
101: VDEGDEEKSR DRTNKPYSLG PKISDWDEQR RDWLKQNPSF PNFVAPNKPR VLLVTGSAPK PCENPVGDHY LLKSIKNKID YCRIHGIEIF YNMALLDAEM
201: AGFWAKLPLI RKLLLSHPEI EFLWWMDSDA MFTDMVFELP WERYKDYNLV MHGWNEMVYD QKNWIGLNTG SFLLRNSQWS LDLLDAWAPM GPKGKIREEA
301: GKVLTRELKD RPAFEADDQS AMVYLLATER EKWGGKVYLE SGYYLHGYWG ILVDRYEEMI ENHKPGFGDH RWPLVTHFVG CKPCGKFGDY PVERCLRQMD
401: RAFNFGDNQI LQMYGFTHKS LGSRRVKPTR NQTDRPLDAK DEFGLLHPPF KAAKLSTTTT

Arabidopsis Description

XXT1XXT1 [Source:UniProtKB/TrEMBL;Acc:A0A178VEJ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.