CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68187	golgi
CDX73082	golgi
CDX85826	golgi
CDX90935	golgi
CDX96540	golgi
CDX97271	golgi
CDY18017	golgi
CDY22055	golgi
CDY49114	golgi
CDY50378	golgi
CDY65940	golgi
CDY70090	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62720.1	CDX68187	AT1G74380.1	22665445
AT3G62720.1	CDX73082	AT1G74380.1	22665445
AT3G62720.1	CDX85826	AT1G74380.1	22665445
AT3G62720.1	CDX96540	AT1G74380.1	22665445
AT3G62720.1	CDY49114	AT1G74380.1	22665445
AT3G62720.1	CDX90935	AT4G02500.1	22665445
AT3G62720.1	CDX97271	AT4G02500.1	22665445
AT3G62720.1	CDY18017	AT4G02500.1	22665445
AT3G62720.1	CDY22055	AT4G02500.1	22665445
AT3G62720.1	CDY50378	AT4G02500.1	22665445
AT3G62720.1	CDY65940	AT4G02500.1	22665445
AT3G62720.1	CDY70090	AT4G02500.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g067930.2.1	Tomato	mitochondrion	60.85	54.76
KRH68171	Soybean	golgi, mitochondrion	60.32	47.3
KRH12052	Soybean	mitochondrion	62.96	44.57
CDY70090	Canola	mitochondrion	71.96	38.42
Bra014396.1-P	Field mustard	mitochondrion	84.66	34.86
CDY70418	Canola	golgi, mitochondrion	84.13	34.57
CDX93965	Canola	mitochondrion	82.54	34.06
AT3G62720.1	Thale cress	mitochondrion	82.01	33.7
CDX97271	Canola	mitochondrion	43.92	30.86
CDX90935	Canola	mitochondrion	72.49	30.51
CDY22055	Canola	mitochondrion	70.37	29.62
CDY65940	Canola	mitochondrion	41.27	29.32
VIT_07s0005g00150.t01	Wine grape	mitochondrion	67.2	28.1
CDY50378	Canola	cytosol	66.67	26.87
VIT_05s0020g01530.t01	Wine grape	mitochondrion	66.14	26.82
KRH37112	Soybean	golgi, mitochondrion	63.49	26.67
KRG96428	Soybean	mitochondrion	61.9	25.71
PGSC0003DMT400058812	Potato	mitochondrion	62.96	25.65
Zm00001d035801_P001	Maize	mitochondrion, nucleus, plastid	25.4	24.87
GSMUA_Achr1P24760_001	Banana	mitochondrion	53.44	23.38
EER92398	Sorghum	golgi	50.79	21.52
CDY18017	Canola	mitochondrion	38.1	21.49
Zm00001d028811_P001	Maize	plasma membrane	50.26	21.25
Zm00001d047694_P001	Maize	golgi	50.26	21.21
TraesCS4B01G188100.1	Wheat	golgi, mitochondrion	49.21	20.62
TraesCS4D01G189500.1	Wheat	golgi, mitochondrion	49.21	20.62
TraesCS4A01G116100.2	Wheat	golgi, mitochondrion	49.21	20.58
HORVU4Hr1G054910.1	Barley	golgi, mitochondrion	49.21	20.58
GSMUA_Achr8P22410_001	Banana	golgi, mitochondrion	46.56	20.51
TraesCS1B01G115300.1	Wheat	golgi, mitochondrion	49.21	19.91
Zm00001d025851_P001	Maize	cytosol	32.28	16.85
Os03t0300000-01	Rice	cytosol	30.16	16.38
CDX99024	Canola	cytosol, golgi, peroxisome, plastid	38.62	16.08
Zm00001d051264_P001	Maize	mitochondrion, plastid	33.33	15.87
CDX69995	Canola	cytosol	37.57	15.6
CDY19235	Canola	cytosol, golgi, plasma membrane, plastid	32.8	13.72
CDY26738	Canola	golgi, mitochondrion, plasma membrane, plastid	33.33	13.07
CDX72649	Canola	golgi	22.75	9.82
CDY29577	Canola	golgi	22.22	9.59
CDX76657	Canola	mitochondrion	8.99	8.85
CDY49440	Canola	golgi	20.63	8.71
CDX76887	Canola	golgi, plastid	20.63	8.71
CDY11442	Canola	cytosol, extracellular, mitochondrion, plastid	1.59	3.53
CDY11443	Canola	cytosol	1.06	3.39
Zm00001d026023_P001	Maize	endoplasmic reticulum, golgi	2.12	1.51
CDY49114	Canola	peroxisome	1.06	1.43
CDX96540	Canola	cytosol	1.06	0.9
CDX73082	Canola	cytosol	1.06	0.9
CDX68187	Canola	cytosol	1.06	0.9
CDX85826	Canola	cytosol	1.06	0.9

Protein Annotations

EnsemblPlants:CDY11441	EnsemblPlantsGene:GSBRNA2T00049509001	GO:A0A078FDP7	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	InterPro:Glyco_trans_34	PANTHER:PTHR31311
PANTHER:PTHR31311:SF6	PFAM:PF05637	ProteinID:CDY11441	ProteinID:CDY11441.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EE5A6A	UniProt:A0A078FDP7	MapMan:21.2.1.1.2	:	:	:

Description

BnaA09g40070DBnaA09g40070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FDP7]

Coordinates

chrLK032011:+:394581..395263

Molecular Weight (calculated)

21805.8 Da

IEP (calculated)

7.956

GRAVY (calculated)

-0.748

Length

189 amino acids

Sequence
(BLAST)

001: MIEKCLGTHR CRKLQRVWRQ GKVTLLCLVL TVIVLRGTIG AGKFGTPEQD IEEIREHFFY SRKRAEPHRV LVEISSETTS STEDGNGNNY ETFDFNKIFV
101: DEGDEEKSEE NRNKPYSLGP KISDWDEQRR DWLKQNPSFP NFVAPNKPRV LLVTGSAPKP CENPVGDHYL LKSIKNKIDY YRVSMVDGQ

Best Arabidopsis Sequence Match ( AT3G62720.1 )
(BLAST)

001: MIEKCIGAHR FRRLQRFMRQ GKVTILCLVL TVIVLRGTIG AGKFGTPEKD IEEIREHFFY TRKRGEPHRV LVEVSSKTTS SEDGGNGGNS YETFDINKLF
101: VDEGDEEKSR DRTNKPYSLG PKISDWDEQR RDWLKQNPSF PNFVAPNKPR VLLVTGSAPK PCENPVGDHY LLKSIKNKID YCRIHGIEIF YNMALLDAEM
201: AGFWAKLPLI RKLLLSHPEI EFLWWMDSDA MFTDMVFELP WERYKDYNLV MHGWNEMVYD QKNWIGLNTG SFLLRNSQWS LDLLDAWAPM GPKGKIREEA
301: GKVLTRELKD RPAFEADDQS AMVYLLATER EKWGGKVYLE SGYYLHGYWG ILVDRYEEMI ENHKPGFGDH RWPLVTHFVG CKPCGKFGDY PVERCLRQMD
401: RAFNFGDNQI LQMYGFTHKS LGSRRVKPTR NQTDRPLDAK DEFGLLHPPF KAAKLSTTTT

Arabidopsis Description

XXT1XXT1 [Source:UniProtKB/TrEMBL;Acc:A0A178VEJ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.