Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, golgi
Predictor Summary:
Predictor Summary:
- golgi 2
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1B01G115300.1 | golgi, golgi |
| TraesCS4A01G116100.2 | golgi, golgi |
| TraesCS4B01G188100.1 | golgi, golgi |
| TraesCS4D01G189500.1 | golgi, golgi |
| TraesCS5A01G129800.1 | golgi, golgi |
| TraesCS5B01G128600.1 | golgi, golgi |
| TraesCS5D01G137300.1 | golgi, golgi |
| TraesCS6A01G196600.1 | golgi, golgi |
| TraesCS6B01G221000.1 | golgi, golgi |
| TraesCS6D01G181200.1 | golgi, golgi |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G116100.2 | Wheat | golgi, mitochondrion | 99.33 | 99.11 |
| TraesCS4B01G188100.1 | Wheat | golgi, mitochondrion | 99.11 | 99.11 |
| HORVU4Hr1G054910.1 | Barley | golgi, mitochondrion | 97.12 | 96.9 |
| Os03t0300000-01 | Rice | cytosol | 70.29 | 91.09 |
| Zm00001d026023_P001 | Maize | endoplasmic reticulum, golgi | 52.77 | 89.81 |
| EER92398 | Sorghum | golgi | 86.47 | 87.44 |
| Zm00001d025851_P001 | Maize | cytosol | 70.07 | 87.29 |
| Zm00001d047694_P001 | Maize | golgi | 86.47 | 87.05 |
| Zm00001d028811_P001 | Maize | plasma membrane | 86.25 | 87.02 |
| Zm00001d051264_P001 | Maize | mitochondrion, plastid | 74.94 | 85.14 |
| Zm00001d035801_P001 | Maize | mitochondrion, nucleus, plastid | 34.37 | 80.31 |
| GSMUA_Achr1P24760_001 | Banana | mitochondrion | 73.84 | 77.08 |
| GSMUA_Achr8P22410_001 | Banana | golgi, mitochondrion | 70.95 | 74.59 |
| CDY11443 | Canola | cytosol | 9.53 | 72.88 |
| CDY22055 | Canola | mitochondrion | 72.51 | 72.83 |
| CDX90935 | Canola | mitochondrion | 72.06 | 72.38 |
| VIT_07s0005g00150.t01 | Wine grape | mitochondrion | 71.84 | 71.68 |
| Bra036262.1-P | Field mustard | mitochondrion | 73.17 | 71.43 |
| CDY18017 | Canola | mitochondrion | 52.99 | 71.34 |
| KRH37112 | Soybean | golgi, mitochondrion | 70.95 | 71.11 |
| Bra000877.1-P | Field mustard | mitochondrion | 72.73 | 70.84 |
| Bra018545.1-P | Field mustard | mitochondrion | 72.28 | 70.56 |
| AT4G02500.1 | Thale cress | mitochondrion | 72.06 | 70.5 |
| KRG96428 | Soybean | mitochondrion | 70.73 | 70.11 |
| CDY50378 | Canola | cytosol | 72.28 | 69.51 |
| Bra007696.1-P | Field mustard | mitochondrion | 69.4 | 68.64 |
| VIT_05s0020g01530.t01 | Wine grape | mitochondrion | 70.51 | 68.24 |
| AT3G62720.1 | Thale cress | mitochondrion | 69.4 | 68.04 |
| CDY70090 | Canola | mitochondrion | 53.22 | 67.8 |
| CDX76657 | Canola | mitochondrion | 28.82 | 67.71 |
| PGSC0003DMT400058812 | Potato | mitochondrion | 69.62 | 67.67 |
| CDX93965 | Canola | mitochondrion | 68.29 | 67.25 |
| Bra014396.1-P | Field mustard | mitochondrion | 68.07 | 66.88 |
| CDY70418 | Canola | golgi, mitochondrion | 68.07 | 66.74 |
| CDX97271 | Canola | mitochondrion | 39.47 | 66.17 |
| KRH12052 | Soybean | mitochondrion | 37.03 | 62.55 |
| CDY65940 | Canola | mitochondrion | 36.81 | 62.41 |
| KRH68171 | Soybean | golgi, mitochondrion | 30.6 | 57.26 |
| CDY11442 | Canola | cytosol, extracellular, mitochondrion, plastid | 10.42 | 55.29 |
| Solyc01g067930.2.1 | Tomato | mitochondrion | 23.73 | 50.95 |
| TraesCS6D01G181200.1 | Wheat | plastid | 53.22 | 50.21 |
| TraesCS5D01G137300.1 | Wheat | golgi, mitochondrion | 49.0 | 49.66 |
| CDY11441 | Canola | mitochondrion | 20.62 | 49.21 |
| TraesCS7D01G441500.1 | Wheat | golgi | 46.34 | 48.95 |
| TraesCS4D01G185900.1 | Wheat | endoplasmic reticulum, golgi, peroxisome | 46.78 | 47.2 |
| TraesCS4D01G185800.1 | Wheat | mitochondrion | 46.34 | 45.34 |
| TraesCS6D01G266700.1 | Wheat | plastid | 36.59 | 35.87 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G189500.1 | EnsemblPlantsGene:TraesCS4D01G189500 | Gene3D:3.90.550.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | GO:GO:0016757 | InterPro:Glyco_trans_34 | InterPro:IPR029044 |
| InterPro:Nucleotide-diphossugar_trans | PANTHER:PTHR31311 | PANTHER:PTHR31311:SF6 | PFAM:PF05637 | SEG:seg | TMHMM:TMhelix |
| MapMan:21.2.1.1.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4D:+:329133553..329134908
Molecular Weight (calculated)
52303.7 Da
IEP (calculated)
7.868
GRAVY (calculated)
-0.522
Length
451 amino acids
Sequence
(BLAST)
(BLAST)
001: MWVAERVLGE RRMREIQRFT RNAKLTVVCL MLTILVLRGT VGAGKFGTPQ QDLTELRHRF ISHPQRALSE HHDARSKASD AQAQATKAAG KAAARDDEPE
101: PQPRSLRDPP YTLGPKISDW DEQRAAWNRR HPETPPFLND VKPRVMLVTG SSPKPCENPV GDHYLLKSIK NKIDYCRIHG LEIFYNMALL DAELAGFWAK
201: LPLLRALLLA HPEVEFFWWM DSDAMFTDMA FELPWERYGP YNFILHGWDE MVYDDKNWIG LNTGSFLLRN CQWSLDYLDT WAPMGPKGPV RIEAGKVLTK
301: YLKDRPVFEA DDQSAMVYIL ATQREKWGNK VYLENGYYLH GYWGILVDRY EEMLENYQPG LGDHRWPLVT HFVGCKPCSK FGDYPVERCL KQMDRAFNFG
401: DNQVLHMYGF EHKSLASRRI KRIRNETSDP LDMKDDYGLL HPAFKALKTT T
101: PQPRSLRDPP YTLGPKISDW DEQRAAWNRR HPETPPFLND VKPRVMLVTG SSPKPCENPV GDHYLLKSIK NKIDYCRIHG LEIFYNMALL DAELAGFWAK
201: LPLLRALLLA HPEVEFFWWM DSDAMFTDMA FELPWERYGP YNFILHGWDE MVYDDKNWIG LNTGSFLLRN CQWSLDYLDT WAPMGPKGPV RIEAGKVLTK
301: YLKDRPVFEA DDQSAMVYIL ATQREKWGNK VYLENGYYLH GYWGILVDRY EEMLENYQPG LGDHRWPLVT HFVGCKPCSK FGDYPVERCL KQMDRAFNFG
401: DNQVLHMYGF EHKSLASRRI KRIRNETSDP LDMKDDYGLL HPAFKALKTT T
001: MIEKCIGAHR FRRLQRFMRQ GKVTILCLVL TVIVLRGTIG AGKFGTPEKD IEEIREHFFY TRKRGEPHRV LVEVSSKTTS SEDGGNGGNS YETFDINKLF
101: VDEGDEEKSR DRTNKPYSLG PKISDWDEQR RDWLKQNPSF PNFVAPNKPR VLLVTGSAPK PCENPVGDHY LLKSIKNKID YCRIHGIEIF YNMALLDAEM
201: AGFWAKLPLI RKLLLSHPEI EFLWWMDSDA MFTDMVFELP WERYKDYNLV MHGWNEMVYD QKNWIGLNTG SFLLRNSQWS LDLLDAWAPM GPKGKIREEA
301: GKVLTRELKD RPAFEADDQS AMVYLLATER EKWGGKVYLE SGYYLHGYWG ILVDRYEEMI ENHKPGFGDH RWPLVTHFVG CKPCGKFGDY PVERCLRQMD
401: RAFNFGDNQI LQMYGFTHKS LGSRRVKPTR NQTDRPLDAK DEFGLLHPPF KAAKLSTTTT
101: VDEGDEEKSR DRTNKPYSLG PKISDWDEQR RDWLKQNPSF PNFVAPNKPR VLLVTGSAPK PCENPVGDHY LLKSIKNKID YCRIHGIEIF YNMALLDAEM
201: AGFWAKLPLI RKLLLSHPEI EFLWWMDSDA MFTDMVFELP WERYKDYNLV MHGWNEMVYD QKNWIGLNTG SFLLRNSQWS LDLLDAWAPM GPKGKIREEA
301: GKVLTRELKD RPAFEADDQS AMVYLLATER EKWGGKVYLE SGYYLHGYWG ILVDRYEEMI ENHKPGFGDH RWPLVTHFVG CKPCGKFGDY PVERCLRQMD
401: RAFNFGDNQI LQMYGFTHKS LGSRRVKPTR NQTDRPLDAK DEFGLLHPPF KAAKLSTTTT
Arabidopsis Description
XXT1XXT1 [Source:UniProtKB/TrEMBL;Acc:A0A178VEJ0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.