CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
golgi 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96428	golgi, golgi
KRH03516	golgi, golgi
KRH12052	golgi, golgi
KRH37112	golgi, golgi
KRH56886	golgi, golgi
KRH68171	golgi, golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62720.1	KRH03516	AT1G74380.1	22665445
AT3G62720.1	KRH56886	AT1G74380.1	22665445
AT3G62720.1	KRG96428	AT4G02500.1	22665445
AT3G62720.1	KRH12052	AT4G02500.1	22665445
AT3G62720.1	KRH37112	AT4G02500.1	22665445
AT3G62720.1	KRH68171	AT4G02500.1	22665445
AT4G02500.1	KRH03516	AT1G74380.1	22665445
AT4G02500.1	KRH56886	AT1G74380.1	22665445
AT4G02500.1	KRG96428	AT4G02500.1	22665445
AT4G02500.1	KRH12052	AT4G02500.1	22665445
AT4G02500.1	KRH37112	AT4G02500.1	22665445
AT4G02500.1	KRH68171	AT4G02500.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68171	Soybean	golgi, mitochondrion	59.55	65.98
Solyc01g067930.2.1	Tomato	mitochondrion	49.81	63.33
CDY11441	Canola	mitochondrion	44.57	62.96
CDY70090	Canola	mitochondrion	77.53	58.47
KRH37112	Soybean	golgi, mitochondrion	93.63	55.56
Bra018545.1-P	Field mustard	mitochondrion	77.9	45.02
Bra036262.1-P	Field mustard	mitochondrion	77.9	45.02
VIT_05s0020g01530.t01	Wine grape	mitochondrion	78.28	44.85
CDY22055	Canola	mitochondrion	74.91	44.54
CDX90935	Canola	mitochondrion	74.91	44.54
AT4G02500.1	Thale cress	mitochondrion	76.78	44.47
Bra000877.1-P	Field mustard	mitochondrion	76.4	44.06
PGSC0003DMT400058812	Potato	mitochondrion	74.16	42.67
Bra007696.1-P	Field mustard	mitochondrion	72.66	42.54
CDX97271	Canola	mitochondrion	42.32	42.01
CDY50378	Canola	cytosol	73.03	41.58
KRG96428	Soybean	mitochondrion	70.79	41.54
GSMUA_Achr1P24760_001	Banana	mitochondrion	67.04	41.44
CDY70418	Canola	golgi, mitochondrion	71.16	41.3
AT3G62720.1	Thale cress	mitochondrion	71.16	41.3
Bra014396.1-P	Field mustard	mitochondrion	70.79	41.18
CDX93965	Canola	mitochondrion	70.04	40.83
CDY65940	Canola	mitochondrion	39.7	39.85
Zm00001d028811_P001	Maize	plasma membrane	64.04	38.26
Zm00001d047694_P001	Maize	golgi	63.67	37.95
EER92398	Sorghum	golgi	63.3	37.89
GSMUA_Achr8P22410_001	Banana	golgi, mitochondrion	59.93	37.3
TraesCS4B01G188100.1	Wheat	golgi, mitochondrion	62.55	37.03
TraesCS4D01G189500.1	Wheat	golgi, mitochondrion	62.55	37.03
HORVU4Hr1G054910.1	Barley	golgi, mitochondrion	62.55	36.95
TraesCS4A01G116100.2	Wheat	golgi, mitochondrion	62.55	36.95
Os03t0300000-01	Rice	cytosol	47.19	36.21
TraesCS1B01G115300.1	Wheat	golgi, mitochondrion	62.55	35.76
Zm00001d051264_P001	Maize	mitochondrion, plastid	51.69	34.76
Zm00001d025851_P001	Maize	cytosol	42.32	31.22
Zm00001d035801_P001	Maize	mitochondrion, nucleus, plastid	21.72	30.05
CDY18017	Canola	mitochondrion	35.58	28.36
KRH03516	Soybean	mitochondrion	46.82	27.96
KRH56886	Soybean	endoplasmic reticulum	46.44	27.74
Zm00001d026023_P001	Maize	endoplasmic reticulum, golgi	23.97	24.15
KRH58138	Soybean	golgi	32.96	20.56
KRH77153	Soybean	golgi, nucleus, peroxisome, plastid	33.33	19.82
KRH28334	Soybean	plastid	33.33	19.69
CDY11442	Canola	cytosol, extracellular, mitochondrion, plastid	4.12	12.94
CDX76657	Canola	mitochondrion	7.12	9.9
CDY11443	Canola	cytosol	0.0	0.0

Protein Annotations

MapMan:21.2.1.1.2	Gene3D:3.90.550.10	EMBL:ACUP02009261	EnsemblPlantsGene:GLYMA_15G148000	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005794
GO:GO:0005802	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009969
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	GO:GO:0016758
GO:GO:0033843	GO:GO:0035252	InterPro:Glyco_trans_34	UniProt:I1MGL4	InterPro:IPR029044	EnsemblPlants:KRH12052
ProteinID:KRH12052	ProteinID:KRH12052.1	InterPro:Nucleotide-diphossugar_trans	PFAM:PF05637	PANTHER:PTHR31311	PANTHER:PTHR31311:SF6
TMHMM:TMhelix	UniParc:UPI00023D20B7	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:12177308..12178505

Molecular Weight (calculated)

30691.6 Da

IEP (calculated)

6.398

GRAVY (calculated)

-0.429

Length

267 amino acids

Sequence
(BLAST)

001: MLERCLGPRR VRQMQRGCRH STVTFLCLFL TLVVLRGTIG AGKFGTPEQD FNEIRHHLSA ARARRVLEET KPESSSESNS NSNNYATFDL SKILVDEPPS
101: DDEKPNPNAP YTLGPKISNW DEQRASWLSN NPDYPNFIGP NKPRVLLVTG SSPKPCENPV GDHYLVKSIK NKIDYCRVHG IEIFYNMALL DAEMAGFWAK
201: LPLIRKLLLS HPEVEFLWWM DSDAMFTDMA FEVPWERYKD SNFVMHGWNE MVYDEKNWIG LTLGVFC

Best Arabidopsis Sequence Match ( AT1G74380.1 )
(BLAST)

001: MGQDGSPAHK RPSGSGGGLP TTTLTNGGGR GGRGGLLPRG RQMQKTFNNI KITILCGFVT ILVLRGTIGV GNLGSSSADA VNQNIIEETN RILAEIRSDS
101: DPTDLDEPQE GDMNPNATYV LGPKITDWDS QRKVWLNQNP EFPSTVNGKA RILLLTGSPP KPCDNPIGDH YLLKSVKNKI DYCRLHGIEI VYNMAHLDKE
201: LAGYWAKLPM IRRLMLSHPE VEWIWWMDSD ALFTDILFQI PLARYQKHNL VIHGYPDLLF DQKSWIALNT GSFLLRNCQW SLDLLDAWAP MGPKGPIRDE
301: AGKVLTAYLK GRPAFEADDQ SALIYLLLSQ KDTWMEKVFV ENQYYLHGFW EGLVDRYEEM IEKYHPGLGD ERWPFVTHFV GCKPCGSYAD YAVERCLKSM
401: ERAFNFADNQ VLKLYGFSHR GLLSPKIKRI RNETVSPLEF VDKFDIRRTP VETKPQN

Arabidopsis Description

XXT5Probable xyloglucan 6-xylosyltransferase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA75]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.