CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
golgi 1
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68187	golgi
CDX73082	golgi
CDX85826	golgi
CDX90935	golgi
CDX96540	golgi
CDX97271	golgi
CDY18017	golgi
CDY22055	golgi
CDY49114	golgi
CDY50378	golgi
CDY65940	golgi
CDY70090	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62720.1	CDX68187	AT1G74380.1	22665445
AT3G62720.1	CDX73082	AT1G74380.1	22665445
AT3G62720.1	CDX85826	AT1G74380.1	22665445
AT3G62720.1	CDX96540	AT1G74380.1	22665445
AT3G62720.1	CDY49114	AT1G74380.1	22665445
AT3G62720.1	CDX90935	AT4G02500.1	22665445
AT3G62720.1	CDX97271	AT4G02500.1	22665445
AT3G62720.1	CDY18017	AT4G02500.1	22665445
AT3G62720.1	CDY22055	AT4G02500.1	22665445
AT3G62720.1	CDY50378	AT4G02500.1	22665445
AT3G62720.1	CDY65940	AT4G02500.1	22665445
AT3G62720.1	CDY70090	AT4G02500.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70418	Canola	golgi, mitochondrion	96.29	95.87
AT3G62720.1	Thale cress	mitochondrion	90.17	89.78
CDY11443	Canola	cytosol	11.35	88.14
CDY11441	Canola	mitochondrion	34.06	82.54
CDX76657	Canola	mitochondrion	34.5	82.29
Zm00001d026023_P001	Maize	endoplasmic reticulum, golgi	46.72	80.75
CDX90935	Canola	mitochondrion	79.04	80.62
Os03t0300000-01	Rice	cytosol	61.14	80.46
CDY22055	Canola	mitochondrion	78.6	80.18
CDY70090	Canola	mitochondrion	60.92	78.81
VIT_07s0005g00150.t01	Wine grape	mitochondrion	77.29	78.32
CDY18017	Canola	mitochondrion	55.68	76.12
CDY50378	Canola	cytosol	77.95	76.12
KRH37112	Soybean	golgi, mitochondrion	74.67	76.0
GSMUA_Achr1P24760_001	Banana	mitochondrion	71.62	75.93
KRG96428	Soybean	mitochondrion	75.11	75.6
VIT_05s0020g01530.t01	Wine grape	mitochondrion	76.86	75.54
CDX97271	Canola	mitochondrion	44.1	75.09
PGSC0003DMT400058812	Potato	mitochondrion	74.67	73.71
GSMUA_Achr8P22410_001	Banana	golgi, mitochondrion	67.9	72.49
Zm00001d025851_P001	Maize	cytosol	56.99	72.1
CDY65940	Canola	mitochondrion	41.7	71.8
Zm00001d028811_P001	Maize	plasma membrane	69.65	71.36
EER92398	Sorghum	golgi	69.43	71.3
Zm00001d047694_P001	Maize	golgi	69.43	70.98
Zm00001d051264_P001	Maize	mitochondrion, plastid	61.14	70.53
KRH12052	Soybean	mitochondrion	40.83	70.04
HORVU4Hr1G054910.1	Barley	golgi, mitochondrion	67.47	68.36
TraesCS4D01G189500.1	Wheat	golgi, mitochondrion	67.25	68.29
TraesCS4B01G188100.1	Wheat	golgi, mitochondrion	67.03	68.07
TraesCS4A01G116100.2	Wheat	golgi, mitochondrion	67.03	67.92
KRH68171	Soybean	golgi, mitochondrion	34.93	66.39
TraesCS1B01G115300.1	Wheat	golgi, mitochondrion	67.25	65.95
CDY49114	Canola	peroxisome	19.65	64.29
CDX96540	Canola	cytosol	30.35	62.61
CDX73082	Canola	cytosol	30.35	62.61
CDX85826	Canola	cytosol	30.13	61.88
CDX68187	Canola	cytosol	30.13	61.88
Solyc01g067930.2.1	Tomato	mitochondrion	27.73	60.48
Zm00001d035801_P001	Maize	mitochondrion, nucleus, plastid	25.11	59.59
CDY11442	Canola	cytosol, extracellular, mitochondrion, plastid	10.92	58.82
CDX99024	Canola	cytosol, golgi, peroxisome, plastid	53.71	54.19
CDX69995	Canola	cytosol	53.28	53.63
CDY19235	Canola	cytosol, golgi, plasma membrane, plastid	49.13	49.78
CDY26738	Canola	golgi, mitochondrion, plasma membrane, plastid	49.56	47.1
CDY29577	Canola	golgi	32.53	34.02
CDX72649	Canola	golgi	32.53	34.02
CDY49440	Canola	golgi	32.97	33.71
CDX76887	Canola	golgi, plastid	32.75	33.48

Protein Annotations

EnsemblPlants:CDX93965	EnsemblPlantsGene:GSBRNA2T00156804001	Gene3D:3.90.550.10	GO:A0A078DXB6	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	InterPro:Glyco_trans_34
InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	PANTHER:PTHR31311	PANTHER:PTHR31311:SF6	PFAM:PF05637	ProteinID:CDX93965
ProteinID:CDX93965.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EEAD5C	MapMan:21.2.1.1.2	:

Description

BnaC04g21240D

Coordinates

chrLK031878:-:956714..958179

Molecular Weight (calculated)

52994.5 Da

IEP (calculated)

8.065

GRAVY (calculated)

-0.508

Length

458 amino acids

Sequence
(BLAST)

001: MIEKCIGTQR LRRLQRVWRQ GKVTLLCLVL TVVVLRGTIG AGKFGTPEQD IEEIREHFFY SRKRAETHRV LVELSSSKTT STKDGAGTSN NNYETFDFKK
101: IFEGDEEKAL DRSKPYSLGP KISDWDEQRR DWLKQNPSFP NFAAANKPRV LLVTGSAPKP CENPVGDHYL LKSIKNKIDY CRIHGIEIFY NMALLDAEMA
201: GFWAKLPLIR KLLLSHPEIE FLWWMDSDAM FTDMVFELPW ERYEDYNLVM HGWKEMVYDQ KNWIGLNTGS FLIRNSQWAL DLLDAWAPMG PKGRIREEAG
301: KVLTRELKDR PAFEADDQSA MVYLLATERE KWGGKVYLES GYYLHGYWGI LVDRYEEMIE NHKPGFGDHR WPLVTHFVGC KPCGKFGDYP VERCLRQMDR
401: AFNFGDNQIL QMYGFTHKSL GSRSVKPTRS QTDMPVDAKD EFGLLHPPFK AGKLATST

Best Arabidopsis Sequence Match ( AT3G62720.1 )
(BLAST)

001: MIEKCIGAHR FRRLQRFMRQ GKVTILCLVL TVIVLRGTIG AGKFGTPEKD IEEIREHFFY TRKRGEPHRV LVEVSSKTTS SEDGGNGGNS YETFDINKLF
101: VDEGDEEKSR DRTNKPYSLG PKISDWDEQR RDWLKQNPSF PNFVAPNKPR VLLVTGSAPK PCENPVGDHY LLKSIKNKID YCRIHGIEIF YNMALLDAEM
201: AGFWAKLPLI RKLLLSHPEI EFLWWMDSDA MFTDMVFELP WERYKDYNLV MHGWNEMVYD QKNWIGLNTG SFLLRNSQWS LDLLDAWAPM GPKGKIREEA
301: GKVLTRELKD RPAFEADDQS AMVYLLATER EKWGGKVYLE SGYYLHGYWG ILVDRYEEMI ENHKPGFGDH RWPLVTHFVG CKPCGKFGDY PVERCLRQMD
401: RAFNFGDNQI LQMYGFTHKS LGSRRVKPTR NQTDRPLDAK DEFGLLHPPF KAAKLSTTTT

Arabidopsis Description

XXT1XXT1 [Source:UniProtKB/TrEMBL;Acc:A0A178VEJ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.