CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, golgi, plastid

Predictor Summary:

nucleus 1
plastid 1
mitochondrion 2
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion, plasma membrane, plastid
Any Predictor:	golgi, mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	mitochondrion
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19235	Canola	cytosol, golgi, plasma membrane, plastid	88.8	94.69
Bra025677.1-P	Field mustard	golgi, mitochondrion, plasma membrane, plastid	96.68	92.64
CDX68187	Canola	cytosol	41.91	90.58
CDX85826	Canola	cytosol	41.91	90.58
CDX73082	Canola	cytosol	41.49	90.09
CDX96540	Canola	cytosol	41.49	90.09
CDY49114	Canola	peroxisome	23.24	80.0
AT1G18690.4	Thale cress	golgi, plastid	82.99	77.97
HORVU6Hr1G040960.1	Barley	cytosol	38.17	76.67
PGSC0003DMT400073000	Potato	cytosol	37.55	75.1
VIT_17s0000g06590.t01	Wine grape	cytosol, golgi, plasma membrane, plastid	69.09	74.0
KRH56886	Soybean	endoplasmic reticulum	68.46	73.83
CDX69995	Canola	cytosol	69.29	73.41
KRH03516	Soybean	mitochondrion	68.05	73.38
CDX99024	Canola	cytosol, golgi, peroxisome, plastid	69.09	73.35
PGSC0003DMT400063414	Potato	plastid	66.81	71.56
Solyc03g115740.1.1	Tomato	plastid	66.18	70.89
PGSC0003DMT400041333	Potato	plastid	65.56	69.6
Solyc05g013020.1.1	Tomato	golgi, mitochondrion, plastid	60.37	65.1
TraesCS5A01G129800.1	Wheat	mitochondrion	59.54	64.49
TraesCS5B01G128600.1	Wheat	golgi, mitochondrion	59.34	64.27
HORVU5Hr1G042000.1	Barley	golgi, mitochondrion	58.92	64.11
GSMUA_Achr10P...	Banana	cytosol	57.47	63.82
TraesCS5D01G137300.1	Wheat	golgi, mitochondrion	58.92	63.82
Zm00001d016687_P001	Maize	plasma membrane	60.79	61.3
EES06903	Sorghum	plastid	60.79	61.04
TraesCS6D01G181200.1	Wheat	plastid	60.37	60.88
Os02t0529600-01	Rice	golgi, peroxisome, plastid	60.58	60.83
TraesCS6A01G196600.1	Wheat	plastid	60.17	60.67
TraesCS6B01G221000.1	Wheat	plastid	60.17	60.67
GSMUA_Achr3P22760_001	Banana	cytosol	57.47	60.35
Os12t0149300-01	Rice	golgi	58.09	60.09
Zm00001d023399_P001	Maize	golgi, mitochondrion	53.94	57.02
Zm00001d023417_P001	Maize	golgi, mitochondrion	53.73	56.8
EES16639	Sorghum	golgi	54.77	56.77
GSMUA_Achr10P...	Banana	plastid	58.71	56.15
GSMUA_Achr11P...	Banana	cytosol	58.71	55.71
CDY22055	Canola	mitochondrion	48.34	51.89
CDX90935	Canola	mitochondrion	47.72	51.22
CDY70418	Canola	golgi, mitochondrion	47.51	49.78
CDX93965	Canola	mitochondrion	47.1	49.56
CDY11442	Canola	cytosol, extracellular, mitochondrion, plastid	8.71	49.41
CDY50378	Canola	cytosol	47.93	49.25
CDY70090	Canola	mitochondrion	35.27	48.02
CDY18017	Canola	mitochondrion	33.2	47.76
CDX97271	Canola	mitochondrion	25.93	46.47
CDX76657	Canola	mitochondrion	18.05	45.31
CDY11443	Canola	cytosol	5.39	44.07
EES15672	Sorghum	mitochondrion	46.47	43.5
CDY65940	Canola	mitochondrion	23.65	42.86
Zm00001d023398_P001	Maize	mitochondrion	45.23	42.5
Zm00001d043041_P001	Maize	nucleus	25.1	41.02
CDY29577	Canola	golgi	33.4	36.76
CDX72649	Canola	golgi	33.4	36.76
CDY49440	Canola	golgi	32.57	35.04
CDX76887	Canola	golgi, plastid	32.57	35.04
CDY11441	Canola	mitochondrion	13.07	33.33
Zm00001d023418_P001	Maize	nucleus	45.23	21.14

Protein Annotations

MapMan:21.2.1.1.2	Gene3D:3.90.550.10	GO:A0A078GQ05	UniProt:A0A078GQ05	EnsemblPlants:CDY26738	ProteinID:CDY26738
ProteinID:CDY26738.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0016757	EnsemblPlantsGene:GSBRNA2T00035649001	InterPro:Glyco_trans_34	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans
PFAM:PF05637	PANTHER:PTHR31311	PANTHER:PTHR31311:SF4	SUPFAM:SSF53448	TMHMM:TMhelix	UniParc:UPI0004EF07D0
SEG:seg	:	:	:	:	:

Description

BnaA06g12840DBnaA06g12840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQ05]

Coordinates

chrLK032193:-:463124..464875

Molecular Weight (calculated)

54632.5 Da

IEP (calculated)

5.260

GRAVY (calculated)

-0.361

Length

482 amino acids

Sequence
(BLAST)

001: MVQDALRTSG SGGGLPTTAV WNGGGRGRGF LRGWQVQNTS INIKIMILCG FVTILVLLGT VSFGNLGSSN ADAVNQNLIK ETEPILAESP SASVPTDLEE
101: LPKPEANPPT DLEEPPIAEE PSKPEANPPP ELEEPPKAEV NPNVTYTLGP RITNWDSQRK VWLNQNPGFP SIVNGKARIL LLTGSPPGPC DKPIGDYYLL
201: KTVKNKIDYC RIHGIEIVYN MAHLDEELSG YWTKLPMIRR LMLSHPEVEW IWWMDSDALF TDILFEIPMS RYEKHNLVIH GYPDLLFNQK SWVALNTGVF
301: LLRNCQWSLD LLDAWAPMGP KGPIRDEAGK VLTAYLKGRP AFEADDQSAL IYLLLSQKEK WMEKVYVENQ YYLHGFWEGL VDKYEEMIEK YHPGLGDERW
401: PFVTHFVGCK PCGSYADYAE ERCFKGMERA FNFADNQVLK LYGFSHMGLL SPKVKRIRNE TVSPLEFVDK FDIRRTHEET KP

Best Arabidopsis Sequence Match ( AT1G18690.1 )
(BLAST)

001: MFQDGSRSSG SGRGLSTTAV SNGGWRTRGF LRGWQIQNTL FNNIKFMILC CFVTILILLG TIRVGNLGSS NADSVNQSFI KETIPILAEI PSDSHSTDLA
101: EPPKADVSPN ATYTLEPRIA EIPSDVHSTD LVELPKADIS PNATYTLGPR IAEIPSDSHL TDLLEPPKAD ISPNATYTLG PKITNWDSQR KVWLNQNPEF
201: PNIVNGKARI LLLTGSSPGP CDKPIGNYYL LKAVKNKIDY CRLHGIEIVY NMANLDEELS GYWTKLPMIR TLMLSHPEVE WIWWMDSDAL FTDILFEIPL
301: PRYENHNLVI HGYPDLLFNQ KSWVALNTGI FLLRNCQWSL DLLDAWAPMG PKGKIRDETG KILTAYLKGR PAFEADDQSA LIYLLLSQKE KWIEKVYVEN
401: QYYLHGFWEG LVDRYEEMIE KYHPGLGDER WPFVTHFVGC KPCGSYADYA VDRCFKSMER AFNFADNQVL KLYGFSHRGL LSPKIKRIRN ETVSPLESVD
501: KFDIRRMHME TKP

Arabidopsis Description

XXT4Xyloglucan 6-xylosyltransferase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9U0]
SUBAcon: [golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.