CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
mitochondrion 3
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES06903	golgi
EES15672	golgi
EES16639	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74380.1	EES06903	AT1G74380.1	22665445
AT1G74380.1	EES15672	AT1G74380.1	22665445
AT1G74380.1	EES16639	AT1G74380.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023417_P001	Maize	golgi, mitochondrion	90.32	92.11
Zm00001d023399_P001	Maize	golgi, mitochondrion	90.32	92.11
TraesCS5A01G129800.1	Wheat	mitochondrion	66.88	69.89
HORVU5Hr1G042000.1	Barley	golgi, mitochondrion	66.24	69.53
TraesCS5D01G137300.1	Wheat	golgi, mitochondrion	66.24	69.21
TraesCS5B01G128600.1	Wheat	golgi, mitochondrion	66.24	69.21
CDY49114	Canola	peroxisome	20.65	68.57
Os12t0149300-01	Rice	golgi	67.74	67.6
CDX73082	Canola	cytosol	32.04	67.12
CDX96540	Canola	cytosol	32.04	67.12
CDX85826	Canola	cytosol	31.83	66.37
CDX68187	Canola	cytosol	31.83	66.37
Bra008146.1-P	Field mustard	cytosol	31.4	65.47
PGSC0003DMT400073000	Potato	cytosol	32.26	62.24
EES06903	Sorghum	plastid	63.87	61.88
KRH03516	Soybean	mitochondrion	58.06	60.4
Bra015915.1-P	Field mustard	plastid	58.92	60.09
KRH56886	Soybean	endoplasmic reticulum	57.63	59.96
GSMUA_Achr10P...	Banana	cytosol	55.91	59.91
AT1G74380.1	Thale cress	plastid	58.71	59.74
Bra003804.1-P	Field mustard	plastid	58.71	59.74
VIT_17s0000g06590.t01	Wine grape	cytosol, golgi, plasma membrane, plastid	57.63	59.56
PGSC0003DMT400063414	Potato	plastid	57.42	59.33
AT5G07720.1	Thale cress	cytosol, plastid	57.63	58.64
Solyc03g115740.1.1	Tomato	plastid	56.34	58.22
CDX99024	Canola	cytosol, golgi, peroxisome, plastid	56.56	57.93
GSMUA_Achr3P22760_001	Banana	cytosol	56.99	57.73
CDX69995	Canola	cytosol	56.34	57.58
Bra009305.1-P	Field mustard	cytosol	56.34	57.58
CDY19235	Canola	cytosol, golgi, plasma membrane, plastid	55.91	57.52
PGSC0003DMT400041333	Potato	plastid	55.7	57.05
CDY26738	Canola	golgi, mitochondrion, plasma membrane, plastid	56.77	54.77
GSMUA_Achr10P...	Banana	plastid	58.28	53.77
Solyc05g013020.1.1	Tomato	golgi, mitochondrion, plastid	51.18	53.24
GSMUA_Achr11P...	Banana	cytosol	57.63	52.76
Bra025677.1-P	Field mustard	golgi, mitochondrion, plasma membrane, plastid	56.34	52.09
EER92398	Sorghum	golgi	49.25	51.35
AT1G18690.4	Thale cress	golgi, plastid	55.7	50.49
EES15672	Sorghum	mitochondrion	54.84	49.51
EES00270	Sorghum	golgi, mitochondrion	45.38	46.58
EER92376	Sorghum	golgi	41.94	43.72
EER92377	Sorghum	golgi	39.57	41.26
EES07343	Sorghum	golgi	34.84	36.57
EES08636	Sorghum	plastid	33.33	34.52
OQU83607	Sorghum	plastid	33.76	34.06
OQU83610	Sorghum	cytosol, golgi, peroxisome, plastid	34.19	33.19

Protein Annotations

MapMan:21.2.1.1.2	Gene3D:3.90.550.10	EntrezGene:8074887	UniProt:C5YRR0	EnsemblPlants:EES16639	ProteinID:EES16639
ProteinID:EES16639.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0005802	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009969	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0016757	GO:GO:0016758	InterPro:Glyco_trans_34	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans
PFAM:PF05637	PANTHER:PTHR31311	PANTHER:PTHR31311:SF8	EnsemblPlantsGene:SORBI_3008G035800	unigene:Sbi.7874	TMHMM:TMhelix
UniParc:UPI0001A88537	RefSeq:XP_002442801.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:3301425..3303035

Molecular Weight (calculated)

52143.4 Da

IEP (calculated)

6.751

GRAVY (calculated)

-0.283

Length

465 amino acids

Sequence
(BLAST)

001: MGVAGGGGRL RASSAKKQRQ RTLNNIKITL LCGFITVLVL RGTAGFNLLI SGGDLDGAAA AAADAKVVED VERILAEIRS DSEADDVVFV VEDDGSSLPS
101: SSPRRNETAA SFGNFSASAT VVKVREYSLG PKLTDWDAQR REWMSRHPEF PPLDPRRGGR PRVLLVSGSP PGPCDNPVGD HYLLKSTKNK IDYCRLHGID
201: VVHNMAHLDP ELTGYWSKLP LVRRLMLAHP EVEWIWWMDS DAIFTDMAFE LPLSRYDGAN LVIHGYPDLL FEKRSWIALN AGIFLLRNCQ WSLDLLDAWV
301: PMGPRGPSRV EAGKLLTASL TGRPAFEADD QSALIHLLLM QKERWMDKVH VETEFYLHGF WTGLVDRYEE MMEEHHPGLG DDRWPFITHF VGCKTCGRYE
401: DYPLDRCVGG MERAFNFADN QVLRLYGFRH RSLTTAKVRR VTDPATNPLM AKEAALKMDA KFSSN

Best Arabidopsis Sequence Match ( AT1G74380.1 )
(BLAST)

001: MGQDGSPAHK RPSGSGGGLP TTTLTNGGGR GGRGGLLPRG RQMQKTFNNI KITILCGFVT ILVLRGTIGV GNLGSSSADA VNQNIIEETN RILAEIRSDS
101: DPTDLDEPQE GDMNPNATYV LGPKITDWDS QRKVWLNQNP EFPSTVNGKA RILLLTGSPP KPCDNPIGDH YLLKSVKNKI DYCRLHGIEI VYNMAHLDKE
201: LAGYWAKLPM IRRLMLSHPE VEWIWWMDSD ALFTDILFQI PLARYQKHNL VIHGYPDLLF DQKSWIALNT GSFLLRNCQW SLDLLDAWAP MGPKGPIRDE
301: AGKVLTAYLK GRPAFEADDQ SALIYLLLSQ KDTWMEKVFV ENQYYLHGFW EGLVDRYEEM IEKYHPGLGD ERWPFVTHFV GCKPCGSYAD YAVERCLKSM
401: ERAFNFADNQ VLKLYGFSHR GLLSPKIKRI RNETVSPLEF VDKFDIRRTP VETKPQN

Arabidopsis Description

XXT5Probable xyloglucan 6-xylosyltransferase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA75]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.