CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES06903	golgi
EES15672	golgi
EES16639	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74380.1	EES06903	AT1G74380.1	22665445
AT1G74380.1	EES15672	AT1G74380.1	22665445
AT1G74380.1	EES16639	AT1G74380.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023398_P001	Maize	mitochondrion	83.3	83.63
Zm00001d043041_P001	Maize	nucleus	41.36	72.2
TraesCS5A01G129800.1	Wheat	mitochondrion	50.49	58.43
HORVU5Hr1G042000.1	Barley	golgi, mitochondrion	50.1	58.24
TraesCS5D01G137300.1	Wheat	golgi, mitochondrion	50.29	58.2
TraesCS5B01G128600.1	Wheat	golgi, mitochondrion	50.1	57.98
CDX85826	Canola	cytosol	25.05	57.85
CDX68187	Canola	cytosol	25.05	57.85
CDX96540	Canola	cytosol	24.85	57.66
CDX73082	Canola	cytosol	24.85	57.66
Os12t0149300-01	Rice	golgi	51.65	57.08
Bra008146.1-P	Field mustard	cytosol	24.47	56.5
CDY49114	Canola	peroxisome	15.34	56.43
PGSC0003DMT400073000	Potato	cytosol	25.83	55.19
EES16639	Sorghum	golgi	49.51	54.84
GSMUA_Achr10P...	Banana	cytosol	43.11	51.15
VIT_17s0000g06590.t01	Wine grape	cytosol, golgi, plasma membrane, plastid	44.66	51.11
KRH56886	Soybean	endoplasmic reticulum	43.69	50.34
KRH03516	Soybean	mitochondrion	43.69	50.34
EES06903	Sorghum	plastid	46.41	49.79
PGSC0003DMT400063414	Potato	plastid	43.3	49.56
Bra015915.1-P	Field mustard	plastid	43.69	49.34
Solyc03g115740.1.1	Tomato	plastid	42.91	49.11
AT1G74380.1	Thale cress	plastid	43.5	49.02
AT5G07720.1	Thale cress	cytosol, plastid	43.5	49.02
Bra003804.1-P	Field mustard	plastid	43.3	48.8
CDX99024	Canola	cytosol, golgi, peroxisome, plastid	42.91	48.68
CDY19235	Canola	cytosol, golgi, plasma membrane, plastid	42.72	48.67
GSMUA_Achr3P22760_001	Banana	cytosol	43.3	48.58
Bra009305.1-P	Field mustard	cytosol	42.91	48.57
CDX69995	Canola	cytosol	42.91	48.57
PGSC0003DMT400041333	Potato	plastid	42.14	47.8
Solyc05g013020.1.1	Tomato	golgi, mitochondrion, plastid	40.58	46.76
CDY26738	Canola	golgi, mitochondrion, plasma membrane, plastid	43.5	46.47
GSMUA_Achr10P...	Banana	plastid	43.88	44.84
GSMUA_Achr11P...	Banana	cytosol	44.08	44.69
EER92398	Sorghum	golgi	38.25	44.17
Bra025677.1-P	Field mustard	golgi, mitochondrion, plasma membrane, plastid	42.72	43.74
EES00270	Sorghum	golgi, mitochondrion	38.06	43.27
AT1G18690.4	Thale cress	golgi, plastid	41.75	41.91
EER92376	Sorghum	golgi	36.12	41.7
EER92377	Sorghum	golgi	34.95	40.36
Zm00001d023418_P001	Maize	nucleus	80.39	40.16
EES07343	Sorghum	golgi	29.32	34.09
EES08636	Sorghum	plastid	28.35	32.52
OQU83610	Sorghum	cytosol, golgi, peroxisome, plastid	29.9	32.15
OQU83607	Sorghum	plastid	26.6	29.72

Protein Annotations

Gene3D:3.90.550.10	MapMan:35.1	EntrezGene:8074886	UniProt:C5YRQ9	EnsemblPlants:EES15672	ProteinID:EES15672
ProteinID:EES15672.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0005802	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009969	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0016757	GO:GO:0016758	InterPro:Glyco_trans_34	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans
PFAM:PF05637	PANTHER:PTHR31311	PANTHER:PTHR31311:SF8	EnsemblPlantsGene:SORBI_3008G035700	TMHMM:TMhelix	UniParc:UPI0001A88573
RefSeq:XP_002441834.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:3299467..3301190

Molecular Weight (calculated)

57175.0 Da

IEP (calculated)

10.225

GRAVY (calculated)

-0.437

Length

515 amino acids

Sequence
(BLAST)

001: MRTPAAGVWR LHPRGSGSGG GGGSKLTRRI ISNVKITLLC AFVTLLVLRG TVGVNRRLVY IAGTSDDNRA AATASTRPVD DIERILREIR ADSDPDAAAK
101: PSFSAEHYDR GAAWTTANYS LGPRVTRWNA KRRRWLHQNP GFPSRDARGG PRVLLVTASP PGPCSSPAGD RFLLRATKNR LDYCRLHGVE MVHVTARLED
201: PELSSSSSSG GAGGWAKLAL LRRLMLAHPE VEWLWWLDAG ALVTDMGFEL PLARYEGAHL VVHGNSYLLF QRRSWDAAST ASFLLRNCQW SLDLLDAWAV
301: MAPRGRARDD AGRLLTATLA GRPEGEADDQ SALVHLLITE KERWMDRVYL ENQFYLHGVW TGLVGKFEEA MEKHHPGYGD DRWPFVTHFA GCKICDGRSN
401: RSASAGDGGG GKNRSDEYPL DRCVGGMERA FNFADNQVLR LYGFRHQSLA TAEVRRVANR SANPLEAKEE ALAFLKKPNE PDPWSSDVRK YLKRKGKGDS
501: VLARILRRLG WRSKI

Best Arabidopsis Sequence Match ( AT5G07720.1 )
(BLAST)

001: MGKEDGFRTQ KRVSTASSAA AGVLPTTMAS GGVRRPPPRG RQIQKTFNNV KMTILCGFVT ILVLRGTIGI NFGTSDADVV NQNIIEETNR LLAEIRSDSD
101: PTDSNEPPDS DLDLNMTYTL GPKITNWDQK RKLWLTQNPD FPSFINGKAK VLLLTGSPPK PCDNPIGDHY LLKSVKNKID YCRIHGIEIV YNMAHLDKEL
201: AGYWAKLPMI RRLMLSHPEI EWIWWMDSDA LFTDMVFEIP LSRYENHNLV IHGYPDLLFD QKSWIALNTG SFLFRNCQWS LDLLDAWAPM GPKGPIREEA
301: GKILTANLKG RPAFEADDQS ALIYLLLSQK ETWMEKVFVE NQYYLHGFWE GLVDKYEEMM EKYHPGLGDE RWPFITHFVG CKPCGSYADY AVERCLKSME
401: RAFNFADNQV LKLYGFGHRG LLSPKIKRIR NETTFPLKFV DRFDIRRTTP LKIEARS

Arabidopsis Description

XXT3Probable xyloglucan 6-xylosyltransferase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF80]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.