CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 3
mitochondrion 2
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES06903	golgi
EES15672	golgi
EES16639	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74380.1	EES06903	AT1G74380.1	22665445
AT1G74380.1	EES15672	AT1G74380.1	22665445
AT1G74380.1	EES16639	AT1G74380.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016687_P001	Maize	plasma membrane	96.88	97.28
HORVU6Hr1G040960.1	Barley	cytosol	46.04	92.08
Os02t0529600-01	Rice	golgi, peroxisome, plastid	89.17	89.17
TraesCS6B01G221000.1	Wheat	plastid	86.88	87.24
TraesCS6D01G181200.1	Wheat	plastid	86.67	87.03
TraesCS6A01G196600.1	Wheat	plastid	86.46	86.82
CDX68187	Canola	cytosol	36.67	78.92
CDX85826	Canola	cytosol	36.67	78.92
CDX73082	Canola	cytosol	36.46	78.83
CDX96540	Canola	cytosol	36.46	78.83
Bra008146.1-P	Field mustard	cytosol	36.46	78.48
CDY49114	Canola	peroxisome	22.5	77.14
PGSC0003DMT400073000	Potato	cytosol	36.88	73.44
GSMUA_Achr10P...	Banana	cytosol	65.62	72.58
VIT_17s0000g06590.t01	Wine grape	cytosol, golgi, plasma membrane, plastid	65.0	69.33
KRH56886	Soybean	endoplasmic reticulum	64.17	68.9
Bra015915.1-P	Field mustard	plastid	65.42	68.86
AT1G74380.1	Thale cress	plastid	65.42	68.71
PGSC0003DMT400063414	Potato	plastid	64.38	68.67
GSMUA_Achr3P22760_001	Banana	cytosol	65.62	68.63
Bra003804.1-P	Field mustard	plastid	65.21	68.49
KRH03516	Soybean	mitochondrion	63.75	68.46
Solyc03g115740.1.1	Tomato	plastid	63.96	68.22
PGSC0003DMT400041333	Potato	plastid	64.38	68.06
CDX99024	Canola	cytosol, golgi, peroxisome, plastid	63.54	67.18
AT5G07720.1	Thale cress	cytosol, plastid	63.75	66.96
CDX69995	Canola	cytosol	63.12	66.59
Bra009305.1-P	Field mustard	cytosol	63.12	66.59
EES16639	Sorghum	golgi	61.88	63.87
CDY19235	Canola	cytosol, golgi, plasma membrane, plastid	59.79	63.5
GSMUA_Achr10P...	Banana	plastid	66.04	62.9
GSMUA_Achr11P...	Banana	cytosol	66.46	62.8
Solyc05g013020.1.1	Tomato	golgi, mitochondrion, plastid	57.08	61.3
CDY26738	Canola	golgi, mitochondrion, plasma membrane, plastid	61.04	60.79
Bra025677.1-P	Field mustard	golgi, mitochondrion, plasma membrane, plastid	60.83	58.05
AT1G18690.4	Thale cress	golgi, plastid	59.58	55.75
EER92398	Sorghum	golgi	49.79	53.59
EES15672	Sorghum	mitochondrion	49.79	46.41
EES00270	Sorghum	golgi, mitochondrion	43.12	45.7
EER92376	Sorghum	golgi	40.83	43.95
EER92377	Sorghum	golgi	39.79	42.83
EES07343	Sorghum	golgi	33.12	35.89
EES08636	Sorghum	plastid	31.88	34.08
OQU83610	Sorghum	cytosol, golgi, peroxisome, plastid	33.54	33.61
OQU83607	Sorghum	plastid	30.62	31.89

Protein Annotations

MapMan:21.2.1.1.2	Gene3D:3.90.550.10	EntrezGene:8058637	UniProt:C5XTD8	EnsemblPlants:EES06903	ProteinID:EES06903
ProteinID:EES06903.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0005802	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009969	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0016757	GO:GO:0016758	InterPro:Glyco_trans_34	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans
PFAM:PF05637	PANTHER:PTHR31311	PANTHER:PTHR31311:SF4	EnsemblPlantsGene:SORBI_3004G164000	TMHMM:TMhelix	UniParc:UPI0001A85BB5
RefSeq:XP_002453927.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:51341441..51346756

Molecular Weight (calculated)

53312.5 Da

IEP (calculated)

7.276

GRAVY (calculated)

-0.363

Length

480 amino acids

Sequence
(BLAST)

001: MGQEGMGYSS KGGGGGGGGG AGGLPMTAPR PRGASPLHHH SRSRKIHRTF NNLKITVLCG LVTILVLRGT IGLNLSLPSQ PSDADALADA KAVEDIDRIL
101: REIRSDSGPD PDDEGDFSAA SGFNASALSA TEADAAYAAA VGRYALGPKI SDWDAQRRRW LARNPGFPAT VAGGKPRIML VTGSQPGPCD NPLGDHYLLK
201: TTKNKIDYCR IHGIQIVHNL AHLDNELAGY WAKLPLLRRL MLSHPEVEWI WWMDSDALFT DMAFELPLSR YDGHNLIIHG YQDLLFEKHS WIALNTGSFL
301: FRNCQWSLDL LDAWAPMGPK GFIRDQAGKV LTANLKGRPA FEADDQSALI YLLLSQKDKW MDKVFIENSY YLHGFWAGLV DKYEEMMENH HPGLGDERWP
401: FVTHFVGCKP CGSYGDYPVE RCLRSMERAF NFADNQVLRL YGFSHKGLES PKIKRTRDQT TRPINDVENL DMKAKISTVS

Best Arabidopsis Sequence Match ( AT5G07720.1 )
(BLAST)

001: MGKEDGFRTQ KRVSTASSAA AGVLPTTMAS GGVRRPPPRG RQIQKTFNNV KMTILCGFVT ILVLRGTIGI NFGTSDADVV NQNIIEETNR LLAEIRSDSD
101: PTDSNEPPDS DLDLNMTYTL GPKITNWDQK RKLWLTQNPD FPSFINGKAK VLLLTGSPPK PCDNPIGDHY LLKSVKNKID YCRIHGIEIV YNMAHLDKEL
201: AGYWAKLPMI RRLMLSHPEI EWIWWMDSDA LFTDMVFEIP LSRYENHNLV IHGYPDLLFD QKSWIALNTG SFLFRNCQWS LDLLDAWAPM GPKGPIREEA
301: GKILTANLKG RPAFEADDQS ALIYLLLSQK ETWMEKVFVE NQYYLHGFWE GLVDKYEEMM EKYHPGLGDE RWPFITHFVG CKPCGSYADY AVERCLKSME
401: RAFNFADNQV LKLYGFGHRG LLSPKIKRIR NETTFPLKFV DRFDIRRTTP LKIEARS

Arabidopsis Description

XXT3Probable xyloglucan 6-xylosyltransferase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF80]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.