Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU5Hr1G042000.1 | golgi |
| HORVU6Hr1G040960.1 | golgi |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G74380.1 | HORVU5Hr1G042000.1 | AT1G74380.1 | 22665445 |
| AT1G74380.1 | HORVU6Hr1G040960.1 | AT1G74380.1 | 22665445 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400073000 | Potato | cytosol | 72.08 | 71.78 |
| CDX68187 | Canola | cytosol | 65.42 | 70.4 |
| CDX85826 | Canola | cytosol | 65.42 | 70.4 |
| CDX96540 | Canola | cytosol | 65.0 | 70.27 |
| CDX73082 | Canola | cytosol | 65.0 | 70.27 |
| Bra008146.1-P | Field mustard | cytosol | 63.75 | 68.61 |
| CDY49114 | Canola | peroxisome | 37.5 | 64.29 |
| TraesCS6B01G221000.1 | Wheat | plastid | 98.33 | 49.37 |
| TraesCS6A01G196600.1 | Wheat | plastid | 97.92 | 49.16 |
| TraesCS6D01G181200.1 | Wheat | plastid | 97.92 | 49.16 |
| Os02t0529600-01 | Rice | golgi, peroxisome, plastid | 93.75 | 46.88 |
| EES06903 | Sorghum | plastid | 92.08 | 46.04 |
| Zm00001d016687_P001 | Maize | plasma membrane | 91.67 | 46.03 |
| GSMUA_Achr10P... | Banana | cytosol | 80.0 | 44.24 |
| PGSC0003DMT400041333 | Potato | plastid | 80.83 | 42.73 |
| AT5G07720.1 | Thale cress | cytosol, plastid | 80.83 | 42.45 |
| KRH56886 | Soybean | endoplasmic reticulum | 78.33 | 42.06 |
| KRH03516 | Soybean | mitochondrion | 78.33 | 42.06 |
| PGSC0003DMT400063414 | Potato | plastid | 78.33 | 41.78 |
| VIT_17s0000g06590.t01 | Wine grape | cytosol, golgi, plasma membrane, plastid | 78.33 | 41.78 |
| GSMUA_Achr3P22760_001 | Banana | cytosol | 79.58 | 41.61 |
| CDX99024 | Canola | cytosol, golgi, peroxisome, plastid | 77.92 | 41.19 |
| Solyc03g115740.1.1 | Tomato | plastid | 77.08 | 41.11 |
| CDX69995 | Canola | cytosol | 77.5 | 40.88 |
| Bra009305.1-P | Field mustard | cytosol | 77.5 | 40.88 |
| Bra015915.1-P | Field mustard | plastid | 77.5 | 40.79 |
| AT1G74380.1 | Thale cress | plastid | 77.5 | 40.7 |
| Bra003804.1-P | Field mustard | plastid | 77.08 | 40.48 |
| HORVU5Hr1G042000.1 | Barley | golgi, mitochondrion | 74.58 | 40.41 |
| CDY19235 | Canola | cytosol, golgi, plasma membrane, plastid | 75.83 | 40.27 |
| Solyc05g013020.1.1 | Tomato | golgi, mitochondrion, plastid | 71.67 | 38.48 |
| GSMUA_Achr11P... | Banana | cytosol | 80.83 | 38.19 |
| CDY26738 | Canola | golgi, mitochondrion, plasma membrane, plastid | 76.67 | 38.17 |
| GSMUA_Achr10P... | Banana | plastid | 79.58 | 37.9 |
| Bra025677.1-P | Field mustard | golgi, mitochondrion, plasma membrane, plastid | 77.5 | 36.98 |
| AT1G18690.4 | Thale cress | golgi, plastid | 78.33 | 36.65 |
| HORVU4Hr1G054910.1 | Barley | golgi, mitochondrion | 64.17 | 34.07 |
| HORVU4Hr1G054020.3 | Barley | golgi | 55.83 | 30.8 |
| HORVU7Hr1G102070.1 | Barley | golgi | 52.08 | 28.09 |
| HORVU4Hr1G054120.3 | Barley | golgi, plasma membrane | 52.08 | 27.0 |
| HORVU6Hr1G071920.1 | Barley | golgi | 43.33 | 24.36 |
| HORVU4Hr1G089670.1 | Barley | endoplasmic reticulum, golgi, peroxisome, plastid | 45.83 | 23.21 |
| HORVU1Hr1G014590.1 | Barley | nucleus | 23.33 | 22.86 |
| HORVU0Hr1G025530.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 20.0 | 19.43 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G040960.1 | EnsemblPlantsGene:HORVU6Hr1G040960 | Gene3D:3.90.550.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | GO:GO:0016757 | InterPro:Glyco_trans_34 | InterPro:IPR029044 |
| InterPro:Nucleotide-diphossugar_trans | PANTHER:PTHR31311 | PANTHER:PTHR31311:SF4 | PFAM:PF05637 | UniParc:UPI000B46FE31 | UniProt:A0A287U0T2 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:+:222538632..222540069
Molecular Weight (calculated)
27951.4 Da
IEP (calculated)
6.235
GRAVY (calculated)
-0.426
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSHPEVEWI WWMDSDALFT DMAFELPLSR YDNHNLIIHG YQDLLVEKHS WIALNTGSFL FRNCQWSLDL LDAWAPMGPK GFIREEAGKI LTAYLKGRPA
101: FEADDQSALI YLLLSQKEKW MDKVYIENSY YLHGFWAGLV DKYEEMMENH HPGLGDERWP FVTHFVGCKP CGSYGDYPVD RCLKSMERAF NFADNQVLRL
201: YGFAHKGLES PKIKRIRSQT TKPINDKENL DVKAKMPTTS
101: FEADDQSALI YLLLSQKEKW MDKVYIENSY YLHGFWAGLV DKYEEMMENH HPGLGDERWP FVTHFVGCKP CGSYGDYPVD RCLKSMERAF NFADNQVLRL
201: YGFAHKGLES PKIKRIRSQT TKPINDKENL DVKAKMPTTS
001: MGKEDGFRTQ KRVSTASSAA AGVLPTTMAS GGVRRPPPRG RQIQKTFNNV KMTILCGFVT ILVLRGTIGI NFGTSDADVV NQNIIEETNR LLAEIRSDSD
101: PTDSNEPPDS DLDLNMTYTL GPKITNWDQK RKLWLTQNPD FPSFINGKAK VLLLTGSPPK PCDNPIGDHY LLKSVKNKID YCRIHGIEIV YNMAHLDKEL
201: AGYWAKLPMI RRLMLSHPEI EWIWWMDSDA LFTDMVFEIP LSRYENHNLV IHGYPDLLFD QKSWIALNTG SFLFRNCQWS LDLLDAWAPM GPKGPIREEA
301: GKILTANLKG RPAFEADDQS ALIYLLLSQK ETWMEKVFVE NQYYLHGFWE GLVDKYEEMM EKYHPGLGDE RWPFITHFVG CKPCGSYADY AVERCLKSME
401: RAFNFADNQV LKLYGFGHRG LLSPKIKRIR NETTFPLKFV DRFDIRRTTP LKIEARS
101: PTDSNEPPDS DLDLNMTYTL GPKITNWDQK RKLWLTQNPD FPSFINGKAK VLLLTGSPPK PCDNPIGDHY LLKSVKNKID YCRIHGIEIV YNMAHLDKEL
201: AGYWAKLPMI RRLMLSHPEI EWIWWMDSDA LFTDMVFEIP LSRYENHNLV IHGYPDLLFD QKSWIALNTG SFLFRNCQWS LDLLDAWAPM GPKGPIREEA
301: GKILTANLKG RPAFEADDQS ALIYLLLSQK ETWMEKVFVE NQYYLHGFWE GLVDKYEEMM EKYHPGLGDE RWPFITHFVG CKPCGSYADY AVERCLKSME
401: RAFNFADNQV LKLYGFGHRG LLSPKIKRIR NETTFPLKFV DRFDIRRTTP LKIEARS
Arabidopsis Description
XXT3Probable xyloglucan 6-xylosyltransferase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF80]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.