Factsheet for HORVU4Hr1G054120.3

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi

Predictor Summary:

golgi 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	golgi
MultiLoc:	golgi
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G184600.1	Wheat	endoplasmic reticulum, golgi, peroxisome	91.79	95.08
TraesCS4A01G120100.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	89.63	94.32
TraesCS4D01G185900.1	Wheat	endoplasmic reticulum, golgi, peroxisome	90.93	94.18
HORVU7Hr1G102070.1	Barley	golgi	79.7	82.92
Zm00001d047647_P001	Maize	mitochondrion	61.56	76.82
EER92376	Sorghum	golgi	69.98	72.65
EER92377	Sorghum	golgi	64.15	66.59
Zm00001d028874_P001	Maize	golgi	65.23	66.37
Os03t0305800-02	Rice	golgi	69.11	66.25
HORVU4Hr1G054020.3	Barley	golgi	59.18	62.99
Zm00001d047648_P001	Maize	endoplasmic reticulum, golgi, mitochondrion, plasma membrane	35.85	59.93
Zm00001d047657_P001	Maize	mitochondrion	21.81	56.74
Zm00001d047654_P001	Maize	golgi, plasma membrane	25.49	56.46
HORVU6Hr1G040960.1	Barley	cytosol	27.0	52.08
HORVU4Hr1G054910.1	Barley	golgi, mitochondrion	44.71	45.8
HORVU5Hr1G042000.1	Barley	golgi, mitochondrion	40.39	42.21
HORVU6Hr1G071920.1	Barley	golgi	32.61	35.36
HORVU4Hr1G089670.1	Barley	endoplasmic reticulum, golgi, peroxisome, plastid	34.99	34.18
HORVU0Hr1G025530.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	17.71	33.2
HORVU1Hr1G014590.1	Barley	nucleus	12.31	23.27

Protein Annotations

EMBL:AK377130	EnsemblPlants:HORVU4Hr1G054120.3	EnsemblPlantsGene:HORVU4Hr1G054120	Gene3D:3.90.550.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	InterPro:Glyco_trans_34
InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	ncoils:Coil	PANTHER:PTHR31311	PANTHER:PTHR31311:SF7	PFAM:PF05637
SEG:seg	TMHMM:TMhelix	UniParc:UPI000B483470	UniProt:A0A287P4G9	MapMan:21.2.1.1.2	:

Description

No Description!

Coordinates

chrchr4H:+:450349872..450353265

Molecular Weight (calculated)

52169.3 Da

IEP (calculated)

7.327

GRAVY (calculated)

-0.295

Length

463 amino acids

Sequence
(BLAST)

001: GAAASACMPL PSSAMAEEHA GDQHEQQVAA ERRARPKLLL AVPIIPIVLF IFAPCALFLF TTDLALPRIR IEYARRDGDR DAPASALAKT LPPPPPKAMV
101: VVPSEEQQQL PPLRQLTDRP YSLGPNVSDY DARRAAWLAA HPRFPAFVAP GRPRVLVVTG SSPRRCKDPE GDHVLLRAFK NKADYCRVHG FDIFYSNAVL
201: DSEMSGFWTK LPLLRALMVA HPEVELLWWV DSDVVFTDML FEPPWGKYAR HNLLLHGWDD AVYGARNWLG TNAGSFVIRN CRWSLDLLDA WARMGPRGPV
301: RDRYGEVFAE ALSNRAAYEA DDQSALVYLL VTERGRWGPK VFLESSYLLH GFWEGIVDRY EEMRSKWRPG LGDDRWPLVT HFVGCKPCGE QSASYEAARC
401: RQGMERALNF ADDQILGLYG FQHQSLNTTA VRRVRNDTGR PLDADDEQIG RLLHPEFRAA KPL

Best Arabidopsis Sequence Match ( AT3G62720.1 )
(BLAST)

001: MIEKCIGAHR FRRLQRFMRQ GKVTILCLVL TVIVLRGTIG AGKFGTPEKD IEEIREHFFY TRKRGEPHRV LVEVSSKTTS SEDGGNGGNS YETFDINKLF
101: VDEGDEEKSR DRTNKPYSLG PKISDWDEQR RDWLKQNPSF PNFVAPNKPR VLLVTGSAPK PCENPVGDHY LLKSIKNKID YCRIHGIEIF YNMALLDAEM
201: AGFWAKLPLI RKLLLSHPEI EFLWWMDSDA MFTDMVFELP WERYKDYNLV MHGWNEMVYD QKNWIGLNTG SFLLRNSQWS LDLLDAWAPM GPKGKIREEA
301: GKVLTRELKD RPAFEADDQS AMVYLLATER EKWGGKVYLE SGYYLHGYWG ILVDRYEEMI ENHKPGFGDH RWPLVTHFVG CKPCGKFGDY PVERCLRQMD
401: RAFNFGDNQI LQMYGFTHKS LGSRRVKPTR NQTDRPLDAK DEFGLLHPPF KAAKLSTTTT

Arabidopsis Description

XXT1XXT1 [Source:UniProtKB/TrEMBL;Acc:A0A178VEJ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.