Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, golgi
Predictor Summary:
Predictor Summary:
- golgi 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU5Hr1G042000.1 | golgi |
| HORVU6Hr1G040960.1 | golgi |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G74380.1 | HORVU5Hr1G042000.1 | AT1G74380.1 | 22665445 |
| AT1G74380.1 | HORVU6Hr1G040960.1 | AT1G74380.1 | 22665445 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G129800.1 | Wheat | mitochondrion | 97.97 | 97.53 |
| TraesCS5D01G137300.1 | Wheat | golgi, mitochondrion | 97.52 | 97.08 |
| TraesCS5B01G128600.1 | Wheat | golgi, mitochondrion | 97.29 | 96.85 |
| Os12t0149300-01 | Rice | golgi | 81.04 | 77.04 |
| HORVU6Hr1G040960.1 | Barley | cytosol | 40.41 | 74.58 |
| CDX96540 | Canola | cytosol | 36.12 | 72.07 |
| CDX73082 | Canola | cytosol | 36.12 | 72.07 |
| CDX85826 | Canola | cytosol | 36.12 | 71.75 |
| CDX68187 | Canola | cytosol | 36.12 | 71.75 |
| Bra008146.1-P | Field mustard | cytosol | 35.67 | 70.85 |
| CDY49114 | Canola | peroxisome | 22.12 | 70.0 |
| PGSC0003DMT400073000 | Potato | cytosol | 37.47 | 68.88 |
| Zm00001d023399_P001 | Maize | golgi, mitochondrion | 68.62 | 66.67 |
| Zm00001d023417_P001 | Maize | golgi, mitochondrion | 68.62 | 66.67 |
| EES16639 | Sorghum | golgi | 69.53 | 66.24 |
| GSMUA_Achr10P... | Banana | cytosol | 62.75 | 64.06 |
| CDX99024 | Canola | cytosol, golgi, peroxisome, plastid | 65.24 | 63.66 |
| AT5G07720.1 | Thale cress | cytosol, plastid | 65.46 | 63.46 |
| Bra015915.1-P | Field mustard | plastid | 65.24 | 63.38 |
| VIT_17s0000g06590.t01 | Wine grape | cytosol, golgi, plasma membrane, plastid | 64.11 | 63.11 |
| CDX69995 | Canola | cytosol | 64.79 | 63.08 |
| Bra009305.1-P | Field mustard | cytosol | 64.56 | 62.86 |
| AT1G74380.1 | Thale cress | plastid | 64.79 | 62.8 |
| Bra003804.1-P | Field mustard | plastid | 64.79 | 62.8 |
| KRH03516 | Soybean | mitochondrion | 63.21 | 62.64 |
| KRH56886 | Soybean | endoplasmic reticulum | 62.98 | 62.42 |
| CDY19235 | Canola | cytosol, golgi, plasma membrane, plastid | 63.43 | 62.17 |
| PGSC0003DMT400063414 | Potato | plastid | 62.08 | 61.11 |
| Solyc03g115740.1.1 | Tomato | plastid | 61.4 | 60.44 |
| GSMUA_Achr3P22760_001 | Banana | cytosol | 62.3 | 60.13 |
| PGSC0003DMT400041333 | Potato | plastid | 61.4 | 59.91 |
| CDY26738 | Canola | golgi, mitochondrion, plasma membrane, plastid | 64.11 | 58.92 |
| Solyc05g013020.1.1 | Tomato | golgi, mitochondrion, plastid | 58.01 | 57.49 |
| Bra025677.1-P | Field mustard | golgi, mitochondrion, plasma membrane, plastid | 64.79 | 57.06 |
| GSMUA_Achr11P... | Banana | cytosol | 63.88 | 55.71 |
| GSMUA_Achr10P... | Banana | plastid | 62.53 | 54.96 |
| AT1G18690.4 | Thale cress | golgi, plastid | 61.17 | 52.83 |
| EES15672 | Sorghum | mitochondrion | 58.24 | 50.1 |
| Zm00001d023398_P001 | Maize | mitochondrion | 56.88 | 49.12 |
| HORVU4Hr1G054910.1 | Barley | golgi, mitochondrion | 49.66 | 48.67 |
| Zm00001d043041_P001 | Maize | nucleus | 31.15 | 46.78 |
| HORVU4Hr1G054020.3 | Barley | golgi | 41.53 | 42.3 |
| HORVU7Hr1G102070.1 | Barley | golgi | 42.44 | 42.25 |
| HORVU4Hr1G054120.3 | Barley | golgi, plasma membrane | 42.21 | 40.39 |
| HORVU6Hr1G071920.1 | Barley | golgi | 33.86 | 35.13 |
| HORVU4Hr1G089670.1 | Barley | endoplasmic reticulum, golgi, peroxisome, plastid | 34.76 | 32.49 |
| HORVU0Hr1G025530.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 16.93 | 30.36 |
| Zm00001d023418_P001 | Maize | nucleus | 56.21 | 24.15 |
| HORVU1Hr1G014590.1 | Barley | nucleus | 11.96 | 21.63 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G042000.1 | EnsemblPlantsGene:HORVU5Hr1G042000 | Gene3D:3.90.550.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | GO:GO:0016757 | InterPro:Glyco_trans_34 | InterPro:IPR029044 |
| InterPro:Nucleotide-diphossugar_trans | PANTHER:PTHR31311 | PANTHER:PTHR31311:SF8 | PFAM:PF05637 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI000B46EC6D | UniProt:A0A287QYN1 | MapMan:21.2.1.1.2 | : | : | : |
Description
No Description!
Coordinates
chrchr5H:+:319144604..319146715
Molecular Weight (calculated)
49702.4 Da
IEP (calculated)
7.341
GRAVY (calculated)
-0.433
Length
443 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAGGLGRPG RPARGGNKQM QKTINNVKIT LICGFITILV LRGTVGINLI AFSGDGGGDA AADAKVAEDI ERILREIRSD SDPDEGDQPV DASSGNSTTM
101: PVVEEKNYTL GPSITRWNAK RRQWLSQNPG FPSRDARGNP RILLVTGSSP GPCDNPAGDH YLLKSTKNKI DYCRIHGIEI VHNMVHLDRE LSGYWSKLPL
201: LRRLMLSHPE VEWVWWMDSD ALFTDMGFEV PLSRYEGSNL VIHGYPELLN KQRSWVALNT GSFLLRNCQW SMELLDAWAP MGPKGRVREA AGKVLTASLT
301: GRPAFEADDQ SALIHLLLTE KERWMEKVYV ENEYYLHGFW AGLVDKYEEM MEKHHPGLGD ERWPFITHFV GCKPCGSYGD YPVEQCLTGM ERAFNFADNQ
401: VLRLYGFRHR SLTNPKVKPV ANRTASPLQN KEASLKMDAK IET
101: PVVEEKNYTL GPSITRWNAK RRQWLSQNPG FPSRDARGNP RILLVTGSSP GPCDNPAGDH YLLKSTKNKI DYCRIHGIEI VHNMVHLDRE LSGYWSKLPL
201: LRRLMLSHPE VEWVWWMDSD ALFTDMGFEV PLSRYEGSNL VIHGYPELLN KQRSWVALNT GSFLLRNCQW SMELLDAWAP MGPKGRVREA AGKVLTASLT
301: GRPAFEADDQ SALIHLLLTE KERWMEKVYV ENEYYLHGFW AGLVDKYEEM MEKHHPGLGD ERWPFITHFV GCKPCGSYGD YPVEQCLTGM ERAFNFADNQ
401: VLRLYGFRHR SLTNPKVKPV ANRTASPLQN KEASLKMDAK IET
001: MGKEDGFRTQ KRVSTASSAA AGVLPTTMAS GGVRRPPPRG RQIQKTFNNV KMTILCGFVT ILVLRGTIGI NFGTSDADVV NQNIIEETNR LLAEIRSDSD
101: PTDSNEPPDS DLDLNMTYTL GPKITNWDQK RKLWLTQNPD FPSFINGKAK VLLLTGSPPK PCDNPIGDHY LLKSVKNKID YCRIHGIEIV YNMAHLDKEL
201: AGYWAKLPMI RRLMLSHPEI EWIWWMDSDA LFTDMVFEIP LSRYENHNLV IHGYPDLLFD QKSWIALNTG SFLFRNCQWS LDLLDAWAPM GPKGPIREEA
301: GKILTANLKG RPAFEADDQS ALIYLLLSQK ETWMEKVFVE NQYYLHGFWE GLVDKYEEMM EKYHPGLGDE RWPFITHFVG CKPCGSYADY AVERCLKSME
401: RAFNFADNQV LKLYGFGHRG LLSPKIKRIR NETTFPLKFV DRFDIRRTTP LKIEARS
101: PTDSNEPPDS DLDLNMTYTL GPKITNWDQK RKLWLTQNPD FPSFINGKAK VLLLTGSPPK PCDNPIGDHY LLKSVKNKID YCRIHGIEIV YNMAHLDKEL
201: AGYWAKLPMI RRLMLSHPEI EWIWWMDSDA LFTDMVFEIP LSRYENHNLV IHGYPDLLFD QKSWIALNTG SFLFRNCQWS LDLLDAWAPM GPKGPIREEA
301: GKILTANLKG RPAFEADDQS ALIYLLLSQK ETWMEKVFVE NQYYLHGFWE GLVDKYEEMM EKYHPGLGDE RWPFITHFVG CKPCGSYADY AVERCLKSME
401: RAFNFADNQV LKLYGFGHRG LLSPKIKRIR NETTFPLKFV DRFDIRRTTP LKIEARS
Arabidopsis Description
XXT3Probable xyloglucan 6-xylosyltransferase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF80]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.