Factsheet for PGSC0003DMT400041333

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400041333	golgi
PGSC0003DMT400063414	golgi
PGSC0003DMT400073000	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74380.1	PGSC0003DMT400041333	AT1G74380.1	22665445
AT1G74380.1	PGSC0003DMT400063414	AT1G74380.1	22665445
AT1G74380.1	PGSC0003DMT400073000	AT1G74380.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063414	Potato	plastid	84.14	84.89
CDX96540	Canola	cytosol	39.87	81.53
CDX73082	Canola	cytosol	39.87	81.53
CDX68187	Canola	cytosol	39.87	81.17
CDX85826	Canola	cytosol	39.87	81.17
HORVU6Hr1G040960.1	Barley	cytosol	42.73	80.83
Bra008146.1-P	Field mustard	cytosol	39.43	80.27
PGSC0003DMT400073000	Potato	cytosol	41.85	78.84
VIT_17s0000g06590.t01	Wine grape	cytosol, golgi, plasma membrane, plastid	77.97	78.67
KRH56886	Soybean	endoplasmic reticulum	77.09	78.3
KRH03516	Soybean	mitochondrion	76.43	77.63
AT1G74380.1	Thale cress	plastid	76.43	75.93
Bra003804.1-P	Field mustard	plastid	75.99	75.49
Bra015915.1-P	Field mustard	plastid	75.77	75.44
CDY49114	Canola	peroxisome	23.13	75.0
AT5G07720.1	Thale cress	cytosol, plastid	75.11	74.62
Bra009305.1-P	Field mustard	cytosol	74.01	73.85
CDX69995	Canola	cytosol	74.01	73.85
CDX99024	Canola	cytosol, golgi, peroxisome, plastid	73.57	73.57
CDY19235	Canola	cytosol, golgi, plasma membrane, plastid	68.5	68.81
GSMUA_Achr10P...	Banana	cytosol	64.1	67.05
CDY26738	Canola	golgi, mitochondrion, plasma membrane, plastid	69.6	65.56
Os02t0529600-01	Rice	golgi, peroxisome, plastid	68.5	64.79
TraesCS6D01G181200.1	Wheat	plastid	68.06	64.64
Zm00001d016687_P001	Maize	plasma membrane	67.84	64.44
TraesCS6B01G221000.1	Wheat	plastid	67.84	64.44
TraesCS6A01G196600.1	Wheat	plastid	67.84	64.44
EES06903	Sorghum	plastid	68.06	64.38
GSMUA_Achr3P22760_001	Banana	cytosol	64.98	64.27
Bra025677.1-P	Field mustard	golgi, mitochondrion, plasma membrane, plastid	69.82	63.02
GSMUA_Achr10P...	Banana	plastid	68.28	61.51
AT1G18690.4	Thale cress	golgi, plastid	69.38	61.4
HORVU5Hr1G042000.1	Barley	golgi, mitochondrion	59.91	61.4
TraesCS5A01G129800.1	Wheat	mitochondrion	59.91	61.12
TraesCS5B01G128600.1	Wheat	golgi, mitochondrion	59.91	61.12
TraesCS5D01G137300.1	Wheat	golgi, mitochondrion	59.47	60.67
Os12t0149300-01	Rice	golgi	61.89	60.3
GSMUA_Achr11P...	Banana	cytosol	65.42	58.46
Zm00001d023399_P001	Maize	golgi, mitochondrion	56.61	56.36
Zm00001d023417_P001	Maize	golgi, mitochondrion	56.39	56.14
EES16639	Sorghum	golgi	57.05	55.7
PGSC0003DMT400058812	Potato	mitochondrion	54.19	53.02
PGSC0003DMT400023470	Potato	endoplasmic reticulum	25.33	42.59
EES15672	Sorghum	mitochondrion	47.8	42.14
Zm00001d023398_P001	Maize	mitochondrion	46.92	41.52
Zm00001d043041_P001	Maize	nucleus	24.89	38.31
PGSC0003DMT400055223	Potato	golgi	36.12	37.27
PGSC0003DMT400085728	Potato	golgi, mitochondrion	36.12	37.02
Zm00001d023418_P001	Maize	nucleus	46.48	20.47

Protein Annotations

EntrezGene:102580717	MapMan:21.2.1.1.2	Gene3D:3.90.550.10	EMBL:AJ864713	ProteinID:CAI11457	ProteinID:CAI11457.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740
GO:GO:0016757	InterPro:Glyco_trans_34	InterPro:IPR029044	UniProt:M1BB80	InterPro:Nucleotide-diphossugar_trans	PFAM:PF05637
EnsemblPlantsGene:PGSC0003DMG400016008	PGSC:PGSC0003DMG400016008	EnsemblPlants:PGSC0003DMT400041333	PANTHER:PTHR31311	PANTHER:PTHR31311:SF4	UniParc:UPI0002966608
RefSeq:XP_006365321.1	RefSeq:XP_006365322.1	RefSeq:XP_015159864.1	:	:	:

Description

Glycosyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400016008]

Coordinates

chr12:+:34641912..34643276

Molecular Weight (calculated)

52043.3 Da

IEP (calculated)

6.946

GRAVY (calculated)

-0.443

Length

454 amino acids

Sequence
(BLAST)

001: MGQESTFTAQ KRAGALPTTV TANGGVRGRS PNVLPRGRQI DRTFNNVKIT ILCGFVTILV LRGTIGIGNV SSSEAEAENQ NLIEETNRIL SDIRSDKDPD
101: DPAGDQPETF MSLNDTYSLG PKIANWDKDR KMWLQKNPEF PNFVNGKPRI LLVTGSPPNP CDNAIGDHYL LKAIKNKIDY CRIHGIEILY NLAYLEKEMA
201: GYWSKLPLIR RLMLSHPEVE WIWWMDSDAL FTDMVFEMPL SKYNRHNLVI HGYPDLLFDQ KSWIALNTGS FLFRNCQWFL DLLDAWAPMG PKGPIREEAG
301: KILTAYLKGR PDFEADDQSA LIYLLVSQKD KWMPKVFVEN SYYLHGYWAG LVDRYEEMIE KYHPGLGDER WPFVTHFVGC KPCGSYGDYP VERCLKSMER
401: AFNFADNQVL DLYGFKHKGL LSPNIKRIRN ETDHPLQYVD QLDVRHAKPK HTGT

Best Arabidopsis Sequence Match ( AT5G07720.1 )
(BLAST)

001: MGKEDGFRTQ KRVSTASSAA AGVLPTTMAS GGVRRPPPRG RQIQKTFNNV KMTILCGFVT ILVLRGTIGI NFGTSDADVV NQNIIEETNR LLAEIRSDSD
101: PTDSNEPPDS DLDLNMTYTL GPKITNWDQK RKLWLTQNPD FPSFINGKAK VLLLTGSPPK PCDNPIGDHY LLKSVKNKID YCRIHGIEIV YNMAHLDKEL
201: AGYWAKLPMI RRLMLSHPEI EWIWWMDSDA LFTDMVFEIP LSRYENHNLV IHGYPDLLFD QKSWIALNTG SFLFRNCQWS LDLLDAWAPM GPKGPIREEA
301: GKILTANLKG RPAFEADDQS ALIYLLLSQK ETWMEKVFVE NQYYLHGFWE GLVDKYEEMM EKYHPGLGDE RWPFITHFVG CKPCGSYADY AVERCLKSME
401: RAFNFADNQV LKLYGFGHRG LLSPKIKRIR NETTFPLKFV DRFDIRRTTP LKIEARS

Arabidopsis Description

XXT3Probable xyloglucan 6-xylosyltransferase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF80]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.