Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, golgi, plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- golgi 1
- cytosol 1
- plastid 1
- peroxisome 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Os02t0529600-01 | golgi |
Os12t0149300-01 | golgi |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G74380.1 | Os02t0529600-01 | AT1G74380.1 | 22665445 |
AT1G74380.1 | Os12t0149300-01 | AT1G74380.1 | 22665445 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
HORVU6Hr1G040960.1 | Barley | cytosol | 46.88 | 93.75 |
Zm00001d016687_P001 | Maize | plasma membrane | 89.58 | 89.96 |
EES06903 | Sorghum | plastid | 89.17 | 89.17 |
TraesCS6B01G221000.1 | Wheat | plastid | 87.92 | 88.28 |
TraesCS6D01G181200.1 | Wheat | plastid | 87.71 | 88.08 |
TraesCS6A01G196600.1 | Wheat | plastid | 87.5 | 87.87 |
CDX85826 | Canola | cytosol | 36.46 | 78.48 |
CDX68187 | Canola | cytosol | 36.46 | 78.48 |
CDX73082 | Canola | cytosol | 36.25 | 78.38 |
CDX96540 | Canola | cytosol | 36.25 | 78.38 |
Bra008146.1-P | Field mustard | cytosol | 36.25 | 78.03 |
CDY49114 | Canola | peroxisome | 22.29 | 76.43 |
GSMUA_Achr10P... | Banana | cytosol | 66.04 | 73.04 |
PGSC0003DMT400073000 | Potato | cytosol | 36.46 | 72.61 |
KRH56886 | Soybean | endoplasmic reticulum | 64.38 | 69.13 |
KRH03516 | Soybean | mitochondrion | 64.17 | 68.9 |
Bra015915.1-P | Field mustard | plastid | 65.42 | 68.86 |
VIT_17s0000g06590.t01 | Wine grape | cytosol, golgi, plasma membrane, plastid | 64.38 | 68.67 |
PGSC0003DMT400041333 | Potato | plastid | 64.79 | 68.5 |
AT1G74380.1 | Thale cress | plastid | 65.21 | 68.49 |
Bra003804.1-P | Field mustard | plastid | 65.21 | 68.49 |
GSMUA_Achr3P22760_001 | Banana | cytosol | 65.0 | 67.97 |
PGSC0003DMT400063414 | Potato | plastid | 63.54 | 67.78 |
AT5G07720.1 | Thale cress | cytosol, plastid | 64.38 | 67.61 |
Os12t0149300-01 | Rice | golgi | 65.42 | 67.38 |
Solyc03g115740.1.1 | Tomato | plastid | 62.92 | 67.11 |
CDX99024 | Canola | cytosol, golgi, peroxisome, plastid | 62.92 | 66.52 |
CDX69995 | Canola | cytosol | 62.5 | 65.93 |
Bra009305.1-P | Field mustard | cytosol | 62.5 | 65.93 |
GSMUA_Achr10P... | Banana | plastid | 66.88 | 63.69 |
CDY19235 | Canola | cytosol, golgi, plasma membrane, plastid | 59.58 | 63.27 |
GSMUA_Achr11P... | Banana | cytosol | 66.67 | 62.99 |
Os03t0300000-01 | Rice | cytosol | 45.62 | 62.93 |
Solyc05g013020.1.1 | Tomato | golgi, mitochondrion, plastid | 57.29 | 61.52 |
CDY26738 | Canola | golgi, mitochondrion, plasma membrane, plastid | 60.83 | 60.58 |
Bra025677.1-P | Field mustard | golgi, mitochondrion, plasma membrane, plastid | 60.83 | 58.05 |
AT1G18690.4 | Thale cress | golgi, plastid | 60.83 | 56.92 |
Os03t0306100-00 | Rice | golgi | 42.92 | 45.88 |
Os03t0305800-02 | Rice | golgi | 42.08 | 41.82 |
Os02t0723200-01 | Rice | mitochondrion | 32.29 | 34.68 |
Os11t0546500-00 | Rice | golgi, peroxisome, plastid | 31.46 | 31.26 |
Protein Annotations
MapMan:21.2.1.1.2 | Gene3D:3.90.550.10 | EntrezGene:4329539 | EMBL:AK100984 | ProteinID:BAD25434.1 | ProteinID:BAF08928.1 |
ProteinID:BAS79020.1 | ProteinID:EEE57116.1 | GO:GO:0000139 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005794 | GO:GO:0005802 |
GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009969 | GO:GO:0009987 |
GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | GO:GO:0016757 | GO:GO:0016758 | InterPro:Glyco_trans_34 |
InterPro:IPR029044 | InterPro:Nucleotide-diphossugar_trans | EnsemblPlantsGene:Os02g0529600 | EnsemblPlants:Os02t0529600-01 | PFAM:PF05637 | PANTHER:PTHR31311 |
PANTHER:PTHR31311:SF4 | UniProt:Q6H765 | TMHMM:TMhelix | UniParc:UPI00003B447F | RefSeq:XP_015627055.1 | RefSeq:XP_015627056.1 |
SEG:seg | : | : | : | : | : |
Description
glycosyltransferase 2Similar to Xyloglucan 6-xylosyltransferase (EC 2.4.2.39) (AtXT1). (Os02t0529600-01)
Coordinates
chr2:-:19451675..19453581
Molecular Weight (calculated)
53426.8 Da
IEP (calculated)
7.891
GRAVY (calculated)
-0.383
Length
480 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQEGMGYNN GKGGGGGGGG LPMTAPRPRG ASPLSSHGHH HRSRKIHRTF NNVKITVLCG LVTILVLRGT IGLNLSLPNQ PTDADALAGA KAVEDIDRIL
101: REIRSDGGAD DDAAAAGDLA GSFNATALNA TEAAAAYASA VERYALGPKI SDWDGQRRRW LRQNPGFPST VAGGKPRILL VTGSQPGPCD NPLGDHYLLK
201: TTKNKIDYCR LHGIEIVHNL AHLDTELAGY WAKLPLLRRL MLSHPEVEWI WWMDSDALFT DMAFELPLSR YQDRNLIIHG YQDLLFEKHS WIALNTGSFL
301: FRNCQWSLDL LDAWAPMGPK GFIRDEAGKI LTANLKGRPA FEADDQSALI YLLLSQKEKW MNKVFIENSY YLHGFWAGLV DKYEEMMENH HPGLGDERWP
401: FVTHFVGCKP CGSYGDYPVE RCLRSMERAF NFADNQVLRL YGFAHKGLES PKIKRVRNQT TKPIDDKENL DVKAKISTTS
101: REIRSDGGAD DDAAAAGDLA GSFNATALNA TEAAAAYASA VERYALGPKI SDWDGQRRRW LRQNPGFPST VAGGKPRILL VTGSQPGPCD NPLGDHYLLK
201: TTKNKIDYCR LHGIEIVHNL AHLDTELAGY WAKLPLLRRL MLSHPEVEWI WWMDSDALFT DMAFELPLSR YQDRNLIIHG YQDLLFEKHS WIALNTGSFL
301: FRNCQWSLDL LDAWAPMGPK GFIRDEAGKI LTANLKGRPA FEADDQSALI YLLLSQKEKW MNKVFIENSY YLHGFWAGLV DKYEEMMENH HPGLGDERWP
401: FVTHFVGCKP CGSYGDYPVE RCLRSMERAF NFADNQVLRL YGFAHKGLES PKIKRVRNQT TKPIDDKENL DVKAKISTTS
001: MGKEDGFRTQ KRVSTASSAA AGVLPTTMAS GGVRRPPPRG RQIQKTFNNV KMTILCGFVT ILVLRGTIGI NFGTSDADVV NQNIIEETNR LLAEIRSDSD
101: PTDSNEPPDS DLDLNMTYTL GPKITNWDQK RKLWLTQNPD FPSFINGKAK VLLLTGSPPK PCDNPIGDHY LLKSVKNKID YCRIHGIEIV YNMAHLDKEL
201: AGYWAKLPMI RRLMLSHPEI EWIWWMDSDA LFTDMVFEIP LSRYENHNLV IHGYPDLLFD QKSWIALNTG SFLFRNCQWS LDLLDAWAPM GPKGPIREEA
301: GKILTANLKG RPAFEADDQS ALIYLLLSQK ETWMEKVFVE NQYYLHGFWE GLVDKYEEMM EKYHPGLGDE RWPFITHFVG CKPCGSYADY AVERCLKSME
401: RAFNFADNQV LKLYGFGHRG LLSPKIKRIR NETTFPLKFV DRFDIRRTTP LKIEARS
101: PTDSNEPPDS DLDLNMTYTL GPKITNWDQK RKLWLTQNPD FPSFINGKAK VLLLTGSPPK PCDNPIGDHY LLKSVKNKID YCRIHGIEIV YNMAHLDKEL
201: AGYWAKLPMI RRLMLSHPEI EWIWWMDSDA LFTDMVFEIP LSRYENHNLV IHGYPDLLFD QKSWIALNTG SFLFRNCQWS LDLLDAWAPM GPKGPIREEA
301: GKILTANLKG RPAFEADDQS ALIYLLLSQK ETWMEKVFVE NQYYLHGFWE GLVDKYEEMM EKYHPGLGDE RWPFITHFVG CKPCGSYADY AVERCLKSME
401: RAFNFADNQV LKLYGFGHRG LLSPKIKRIR NETTFPLKFV DRFDIRRTTP LKIEARS
Arabidopsis Description
XXT3Probable xyloglucan 6-xylosyltransferase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF80]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.