CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

plastid 1
peroxisome 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
BaCelLo:	plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68187	golgi
CDX73082	golgi
CDX85826	golgi
CDX96540	golgi
CDY49114	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74380.1	CDX68187	AT1G74380.1	22665445
AT1G74380.1	CDX73082	AT1G74380.1	22665445
AT1G74380.1	CDX85826	AT1G74380.1	22665445
AT1G74380.1	CDX96540	AT1G74380.1	22665445
AT1G74380.1	CDY49114	AT1G74380.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008146.1-P	Field mustard	cytosol	87.86	55.16
CDX73082	Canola	cytosol	86.43	54.5
CDX96540	Canola	cytosol	86.43	54.5
CDX68187	Canola	cytosol	86.43	54.26
CDX85826	Canola	cytosol	86.43	54.26
CDY11442	Canola	cytosol, extracellular, mitochondrion, plastid	26.43	43.53
HORVU6Hr1G040960.1	Barley	cytosol	64.29	37.5
PGSC0003DMT400073000	Potato	cytosol	57.14	33.2
CDY65940	Canola	mitochondrion	50.71	26.69
AT1G74380.1	Thale cress	plastid	86.43	26.48
CDX97271	Canola	mitochondrion	50.71	26.39
CDX99024	Canola	cytosol, golgi, peroxisome, plastid	82.14	25.33
CDX69995	Canola	cytosol	81.43	25.05
CDY19235	Canola	cytosol, golgi, plasma membrane, plastid	78.57	24.34
VIT_17s0000g06590.t01	Wine grape	cytosol, golgi, plasma membrane, plastid	77.86	24.22
CDY70090	Canola	mitochondrion	60.71	24.01
GSMUA_Achr10P...	Banana	cytosol	73.57	23.73
KRH03516	Soybean	mitochondrion	75.0	23.49
KRH56886	Soybean	endoplasmic reticulum	74.29	23.27
CDY26738	Canola	golgi, mitochondrion, plasma membrane, plastid	80.0	23.24
PGSC0003DMT400041333	Potato	plastid	75.0	23.13
GSMUA_Achr3P22760_001	Banana	cytosol	75.71	23.09
Solyc03g115740.1.1	Tomato	plastid	72.86	22.67
PGSC0003DMT400063414	Potato	plastid	72.86	22.67
Zm00001d016687_P001	Maize	plasma membrane	77.14	22.59
EES06903	Sorghum	plastid	77.14	22.5
TraesCS5B01G128600.1	Wheat	golgi, mitochondrion	71.43	22.47
Os02t0529600-01	Rice	golgi, peroxisome, plastid	76.43	22.29
TraesCS5A01G129800.1	Wheat	mitochondrion	70.71	22.25
TraesCS5D01G137300.1	Wheat	golgi, mitochondrion	70.71	22.25
TraesCS6A01G196600.1	Wheat	plastid	75.71	22.18
TraesCS6D01G181200.1	Wheat	plastid	75.71	22.18
HORVU5Hr1G042000.1	Barley	golgi, mitochondrion	70.0	22.12
Os12t0149300-01	Rice	golgi	73.57	22.1
CDY18017	Canola	mitochondrion	52.86	22.09
TraesCS6B01G221000.1	Wheat	plastid	75.0	21.97
Solyc05g013020.1.1	Tomato	golgi, mitochondrion, plastid	68.57	21.48
GSMUA_Achr10P...	Banana	plastid	75.71	21.03
CDY22055	Canola	mitochondrion	66.43	20.71
GSMUA_Achr11P...	Banana	cytosol	75.0	20.67
EES16639	Sorghum	golgi	68.57	20.65
CDX90935	Canola	mitochondrion	65.71	20.49
Zm00001d023417_P001	Maize	golgi, mitochondrion	65.71	20.18
Zm00001d023399_P001	Maize	golgi, mitochondrion	65.71	20.18
CDY70418	Canola	golgi, mitochondrion	65.0	19.78
CDX93965	Canola	mitochondrion	64.29	19.65
CDY50378	Canola	cytosol	65.71	19.62
Zm00001d043041_P001	Maize	nucleus	37.14	17.63
CDX76657	Canola	mitochondrion	22.86	16.67
EES15672	Sorghum	mitochondrion	56.43	15.34
Zm00001d023398_P001	Maize	mitochondrion	55.0	15.01
CDY29577	Canola	golgi	37.86	12.1
CDX72649	Canola	golgi	37.14	11.87
CDY49440	Canola	golgi	36.43	11.38
CDX76887	Canola	golgi, plastid	36.43	11.38
Zm00001d023418_P001	Maize	nucleus	55.71	7.57
CDY11443	Canola	cytosol	1.43	3.39
CDY11441	Canola	mitochondrion	1.43	1.06

Protein Annotations

EnsemblPlants:CDY49114	EnsemblPlantsGene:GSBRNA2T00092348001	GO:A0A078IIB6	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	InterPro:Glyco_trans_34	PANTHER:PTHR31311
PANTHER:PTHR31311:SF4	PFAM:PF05637	ProteinID:CDY49114	ProteinID:CDY49114.1	UniParc:UPI0004EDBDA0	UniProt:A0A078IIB6
MapMan:35.1	:	:	:	:	:

Description

BnaA02g16920DBnaA02g16920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IIB6]

Coordinates

chrLK032811:-:27714..28262

Molecular Weight (calculated)

16346.9 Da

IEP (calculated)

6.796

GRAVY (calculated)

-0.196

Length

140 amino acids

Sequence
(BLAST)

001: MAHLDKELAG YWAKLPMIRR LMLSHPDKSW IALNTRSFLL RNCQWSLDLL DAWAPMGPKG VIRNEAGKVL TGYLKGRPAF EADDQSALIY LLLSQKDTWM
101: EKAFVEIQYY LHGFWEGLVD MYEEMVESIS RGWVMRDGRF

Best Arabidopsis Sequence Match ( AT1G18690.1 )
(BLAST)

001: MFQDGSRSSG SGRGLSTTAV SNGGWRTRGF LRGWQIQNTL FNNIKFMILC CFVTILILLG TIRVGNLGSS NADSVNQSFI KETIPILAEI PSDSHSTDLA
101: EPPKADVSPN ATYTLEPRIA EIPSDVHSTD LVELPKADIS PNATYTLGPR IAEIPSDSHL TDLLEPPKAD ISPNATYTLG PKITNWDSQR KVWLNQNPEF
201: PNIVNGKARI LLLTGSSPGP CDKPIGNYYL LKAVKNKIDY CRLHGIEIVY NMANLDEELS GYWTKLPMIR TLMLSHPEVE WIWWMDSDAL FTDILFEIPL
301: PRYENHNLVI HGYPDLLFNQ KSWVALNTGI FLLRNCQWSL DLLDAWAPMG PKGKIRDETG KILTAYLKGR PAFEADDQSA LIYLLLSQKE KWIEKVYVEN
401: QYYLHGFWEG LVDRYEEMIE KYHPGLGDER WPFVTHFVGC KPCGSYADYA VDRCFKSMER AFNFADNQVL KLYGFSHRGL LSPKIKRIRN ETVSPLESVD
501: KFDIRRMHME TKP

Arabidopsis Description

XXT4Xyloglucan 6-xylosyltransferase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9U0]
SUBAcon: [golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.