CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
mitochondrion 1
golgi 4
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017847.1-P	Field mustard	golgi	99.77	99.77
CDX72649	Canola	golgi	98.86	98.86
AT4G37690.1	Thale cress	golgi	87.9	89.12
AT4G38310.1	Thale cress	nucleus	23.06	84.17
CDY49440	Canola	golgi	77.63	75.89
CDX76887	Canola	golgi, plastid	77.63	75.89
PGSC0003DMT400023470	Potato	endoplasmic reticulum	37.44	60.74
PGSC0003DMT400055223	Potato	golgi	59.13	58.86
Solyc03g043920.2.1	Tomato	golgi	54.79	57.97
KRH77153	Soybean	golgi, nucleus, peroxisome, plastid	57.08	55.68
KRH28334	Soybean	plastid	57.31	55.53
VIT_00s0322g00030.t01	Wine grape	mitochondrion	41.32	52.77
GSMUA_Achr3P30030_001	Banana	golgi	47.03	51.89
HORVU6Hr1G071920.1	Barley	golgi	49.54	50.82
TraesCS6B01G315100.1	Wheat	golgi, plasma membrane	49.09	50.71
GSMUA_Achr3P30020_001	Banana	cytosol, golgi, plastid	50.46	49.77
Zm00001d051681_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	50.0	49.32
EES07343	Sorghum	golgi	49.77	49.21
Os02t0723200-01	Rice	mitochondrion	48.4	47.43
TraesCS6D01G266700.1	Wheat	plastid	48.63	46.3
Zm00001d052625_P001	Maize	plastid	46.58	46.26
GSMUA_Achr1P12580_001	Banana	golgi, plastid, vacuole	45.43	44.72
EES08636	Sorghum	plastid	45.66	44.54
OQU83610	Sorghum	cytosol, golgi, peroxisome, plastid	47.49	43.42
TraesCSU01G194500.1	Wheat	golgi	44.75	42.79
Os11t0546500-00	Rice	golgi, peroxisome, plastid	47.03	42.65
Zm00001d052628_P001	Maize	plasma membrane	46.58	42.59
OQU83607	Sorghum	plastid	44.75	42.52
Zm00001d052627_P001	Maize	plastid	44.06	42.14
HORVU4Hr1G089670.1	Barley	endoplasmic reticulum, golgi, peroxisome, plastid	44.98	41.56
TraesCSU01G035200.1	Wheat	endoplasmic reticulum, golgi, peroxisome	44.75	41.35
TraesCS4B01G391200.1	Wheat	endoplasmic reticulum	44.98	41.13
TraesCS6B01G078800.1	Wheat	plastid	44.06	40.8
CDY49114	Canola	peroxisome	12.1	37.86
CDX73082	Canola	cytosol	19.18	37.84
CDX96540	Canola	cytosol	19.18	37.84
CDX68187	Canola	cytosol	19.18	37.67
CDX85826	Canola	cytosol	19.18	37.67
HORVU0Hr1G025530.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	20.09	35.63
CDY19235	Canola	cytosol, golgi, plasma membrane, plastid	36.3	35.18
CDX69995	Canola	cytosol	36.3	34.95
CDX99024	Canola	cytosol, golgi, peroxisome, plastid	35.62	34.36
CDY26738	Canola	golgi, mitochondrion, plasma membrane, plastid	36.76	33.4
CDY70418	Canola	golgi, mitochondrion	34.47	32.83
CDY70090	Canola	mitochondrion	26.48	32.77
CDX93965	Canola	mitochondrion	34.02	32.53
CDX90935	Canola	mitochondrion	33.33	32.52
CDY22055	Canola	mitochondrion	32.88	32.07
CDY50378	Canola	cytosol	32.88	30.7
CDY11442	Canola	cytosol, extracellular, mitochondrion, plastid	5.94	30.59
CDY18017	Canola	mitochondrion	21.0	27.46
CDX97271	Canola	mitochondrion	16.44	26.77
CDY11443	Canola	cytosol	3.42	25.42
CDY65940	Canola	mitochondrion	15.3	25.19
CDX76657	Canola	mitochondrion	10.96	25.0
CDY11441	Canola	mitochondrion	9.59	22.22

Protein Annotations

EnsemblPlants:CDY29577	EnsemblPlantsGene:GSBRNA2T00043302001	Gene3D:3.90.550.10	GO:A0A078GWM5	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	InterPro:Glyco_trans_34
InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	PANTHER:PTHR31311	PANTHER:PTHR31311:SF3	PFAM:PF05637	ProteinID:CDY29577
ProteinID:CDY29577.1	TMHMM:TMhelix	UniParc:UPI0004EF12BE	UniProt:A0A078GWM5	MapMan:21.2.3.1.3	:

Description

BnaA03g54220DBnaA03g54220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GWM5]

Coordinates

chrLK032239:+:390005..391321

Molecular Weight (calculated)

50809.0 Da

IEP (calculated)

6.786

GRAVY (calculated)

-0.447

Length

438 amino acids

Sequence
(BLAST)

001: MGKHGGAKTR TAVCFSDGVI FFAGAFMSLI LVWSYFSIFS PSSNFTLIGF RRGTEPAKCS GFDMQFDPED PGSFYDDPDL SYSIERPIAG WDEKRKQWLE
101: SHPSFKPGSE NRIVMVTGSQ PAPCKNPIGD HLLLRCFKNK VDYCRIHGHD IFYSNSLLHP KMNSYWTKLP AVKAAMLAHP EAEWIWWVDS DAIFTDMEFT
201: LPLHRYRYHN LVVHGWPSII YDQQSWTAVN AGVFLIRNCQ WSMDLIDTWK SMGPVSPDYA KWGPIQRSIF KDKLFPESDD QTALIYLLYK HKEVYYPKIY
301: LEAEYYFQGY WIGVVGGFFA NVTERYLEME REDATLRRRH AEKVSERYGA FREERFLKGE FGGRGSRRRA FVTHFTGCQP CSGDHNPSYD GDTCWNEMIR
401: ALNFADNQVM RAYGYVHTDL SKTSPLQPLP FDYPDETW

Best Arabidopsis Sequence Match ( AT4G37690.1 )
(BLAST)

001: MGKPGGAKTR TAVCLSDGVF FLAGAFMSLT LVWSYFSIFS PSFTSLRHDG KPVQCSGLDM QFDPSEPGFY DDPDLSYSIE KPITKWDEKR NQWFESHPSF
101: KPGSENRIVM VTGSQSSPCK NPIGDHLLLR CFKNKVDYAR IHGHDIFYSN SLLHPKMNSY WAKLPVVKAA MLAHPEAEWI WWVDSDAIFT DMEFKPPLHR
201: YRQHNLVVHG WPNIIYEKQS WTALNAGVFL IRNCQWSMDL IDTWKSMGPV SPDYKKWGPI QRSIFKDKLF PESDDQTALI YLLYKHKELY YPKIYLEAEY
301: YLQGYWIGVF GDFANVTERY LEMEREDDTL RRRHAEKVSE RYGAFREERF LKGEFGGRGS RRRAFITHFT GCQPCSGDHN PSYDGDTCWN EMIRALNFAD
401: NQVMRVYGYV HSDLSKTSPL QPLPFDYPNE AW

Arabidopsis Description

GT6Glycosyltransferase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZG1]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.